NONHSAT081089
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081089 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1802 nt |
Genomic location |
chr21+:11172906..11184123 |
Exon number |
2 |
Exons |
11172906..11174002,11183419..11184123 |
Genome context |
|
Sequence |
000001 AAATAATACA AAATAAAAAT ATTTTTTATT ATTTAGTACA CACTATTTGT ATTATTTAGT ACCACACTTT TTGCAAACCG 000080
000081 TGAGCATACA TCCAAGCTTC CCTAAATATA CACACACTCG AGGTTGTGTT TATAAGAGCT TTATGGTTGC AAGTTTTGTG 000160 000161 AATAATCTTT AATCCTTTTG AGTTAAAGTG TTTTTTTTGG TACCACAAGA GTCCTGTATT ATTTAGTACC ACAAGAGTCC 000240 000241 TGTATTATTC TTTTGCATAT GGATATCTAG TTTTGGAAAC CTTCCCCATT GTGTTGTTTT GGTGGTGTTT TGAAAAATGT 000320 000321 GTTCACTCTG TGTAAATTTG TGTTTATTAT TGAGCGCTCT CATTTTGCTC ACTGGTCTGT GTTTCTCTGT GTATGCCAGT 000400 000401 AACATATGGA TTGGTTAACT AGGGATTTTC GTTTAATTCG AACTCAGGGA ATGTGATGCA GCCCATATGG TTTGTATTTC 000480 000481 TCAGGATTGC TTTAGAAATT CAGGGTGTTT CGTATTTCCA CATAAATTTT GGCATTGTTT CTTTGTATTT CTTAAAACAC 000560 000561 TATTTGCCAT ACACTAAGTG TATATAAGTA GAGGGTACAA GGAAGATTTC GATACATGTA TATGTTGAGT AATGAAAAAA 000640 000641 TCAAGTTATT TAGCATCTCT TCACCTCATA GTTACTACTT TTTGAGTGGT AACAACATTC AGAATCTTTC CTTCTAGCTA 000720 000721 CTTTGAAATA TATGATACAT TTGTATTAAG GCTAGTCACC CTGCTGTAGA ATAGAAGACC AGAATTGATT ACTGTCATCT 000800 000801 AAGAGTAACT TTGTACCCAT TACTGATTCC TTCCCCGACC CTCTCCACCT CCCCAGCAGC CTCTGGTAAT CCCTATTGAA 000880 000881 CTTTCTACTT CTAGGAGATA AAGCTTTTTT CAGTCTACAT GTCTGAGATC ACGTGGCATG GGACTTTCTC TGCCAGGCTC 000960 000961 ATTTGTTGGA CCTGATGTTC TCCAGGTTTC TTCATGTGGC TGCAGATGGC AGGATTTCCC AAAGCTTTAT GGCTGAAACA 001040 001041 TATTCCGTGG TGTATCTGTA TGGCAGTTTC TTCATCCCTG AAGCTGTGTA CGGACAGCTT GGAAGCTGTC ACTCCTGTCC 001120 001121 TCACAACGAC AACAAAAAAC ACCTTGAACA AACTGAAAAT TACAACTTTT CTTAGATCCA TCAGAGACTT GAGGTTAACA 001200 001201 GGGAAAACCG TTATCCCCCA AATTGGAGAG GCAGTGAGTC CCAGCCTAAC AGGATCGGAG GCTGGCCACT GGAGCCAGAA 001280 001281 CCACGGTGGG AAGACTTACA TGTAAACAAC AAATCGCTGG AGGCTCCATG CACATAAACT TGAGAATTAA GAATTAAGGG 001360 001361 AGCCCAGTCT TAGGGGGCCC TACACTTTCA TGAACCTCCA AGAGCTCTGC CAGACGCTCT TATGCACATC AGAGAAAAAT 001440 001441 TCCCTCCTGC TTCCCACAGG GAAGGGGAAA AGTAACTACT TTGAAATATG CCCTGGGTGT TCCGTTCTCC TTAGCAAAAG 001520 001521 CCTGCCCCAG GGAAACCATT TCACAAGAGT CTAACCACCT TGGGCTTTAG CAGGGCCTAA CACCTGTTAG AATAAGAATA 001600 001601 AAAATTGCAT CAAACTTTTC TTCAGAACCC ATGCAAGCAA GCAAAAAAAT TCCACCAAAC TAAAATTCTG TATCCTGCAA 001680 001681 AATTATCTTT CCAAAGTGAA GAAAAAGACT TTCTCAGAGA AACACAAATT TGCTGTCAGT AGATCTGTCA AAATGTTAAA 001760 001761 AGAAGTTATC CAGAGAGAAG AAAATGATAT AGGCTAAAAA CT |
Predicted Small Protein
Name | NONHSAT081089_smProtein_974:1174 |
Length | 67 |
Molecular weight | 7571.3469 |
Aromaticity | 0.166666666667 |
Instability index | 48.7363636364 |
Isoelectric point | 5.99847412109 |
Runs | 13 |
Runs residual | 0.0463618218109 |
Runs probability | 0.0476064299594 |
Amino acid sequence | MFSRFLHVAADGRISQSFMAETYSVVYLYGSFFIPEAVYGQLGSCHSCPHNDNKKHLEQT ENYNFS |
Secondary structure | LLEEEEEELLLLLEEHHHHHHEEEEEEEEELEEELHHHHLLLLLLLLLLLLLLHHHHHHH HLLLLL |
PRMN | - |
PiMo | - |