NONHSAT081089

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT081089

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1802 nt

Genomic location

chr21+:11172906..11184123

Exon number

2

Exons

11172906..11174002,11183419..11184123

Genome context

Sequence
000001 AAATAATACA AAATAAAAAT ATTTTTTATT ATTTAGTACA CACTATTTGT ATTATTTAGT ACCACACTTT TTGCAAACCG 000080
000081 TGAGCATACA TCCAAGCTTC CCTAAATATA CACACACTCG AGGTTGTGTT TATAAGAGCT TTATGGTTGC AAGTTTTGTG 000160
000161 AATAATCTTT AATCCTTTTG AGTTAAAGTG TTTTTTTTGG TACCACAAGA GTCCTGTATT ATTTAGTACC ACAAGAGTCC 000240
000241 TGTATTATTC TTTTGCATAT GGATATCTAG TTTTGGAAAC CTTCCCCATT GTGTTGTTTT GGTGGTGTTT TGAAAAATGT 000320
000321 GTTCACTCTG TGTAAATTTG TGTTTATTAT TGAGCGCTCT CATTTTGCTC ACTGGTCTGT GTTTCTCTGT GTATGCCAGT 000400
000401 AACATATGGA TTGGTTAACT AGGGATTTTC GTTTAATTCG AACTCAGGGA ATGTGATGCA GCCCATATGG TTTGTATTTC 000480
000481 TCAGGATTGC TTTAGAAATT CAGGGTGTTT CGTATTTCCA CATAAATTTT GGCATTGTTT CTTTGTATTT CTTAAAACAC 000560
000561 TATTTGCCAT ACACTAAGTG TATATAAGTA GAGGGTACAA GGAAGATTTC GATACATGTA TATGTTGAGT AATGAAAAAA 000640
000641 TCAAGTTATT TAGCATCTCT TCACCTCATA GTTACTACTT TTTGAGTGGT AACAACATTC AGAATCTTTC CTTCTAGCTA 000720
000721 CTTTGAAATA TATGATACAT TTGTATTAAG GCTAGTCACC CTGCTGTAGA ATAGAAGACC AGAATTGATT ACTGTCATCT 000800
000801 AAGAGTAACT TTGTACCCAT TACTGATTCC TTCCCCGACC CTCTCCACCT CCCCAGCAGC CTCTGGTAAT CCCTATTGAA 000880
000881 CTTTCTACTT CTAGGAGATA AAGCTTTTTT CAGTCTACAT GTCTGAGATC ACGTGGCATG GGACTTTCTC TGCCAGGCTC 000960
000961 ATTTGTTGGA CCTGATGTTC TCCAGGTTTC TTCATGTGGC TGCAGATGGC AGGATTTCCC AAAGCTTTAT GGCTGAAACA 001040
001041 TATTCCGTGG TGTATCTGTA TGGCAGTTTC TTCATCCCTG AAGCTGTGTA CGGACAGCTT GGAAGCTGTC ACTCCTGTCC 001120
001121 TCACAACGAC AACAAAAAAC ACCTTGAACA AACTGAAAAT TACAACTTTT CTTAGATCCA TCAGAGACTT GAGGTTAACA 001200
001201 GGGAAAACCG TTATCCCCCA AATTGGAGAG GCAGTGAGTC CCAGCCTAAC AGGATCGGAG GCTGGCCACT GGAGCCAGAA 001280
001281 CCACGGTGGG AAGACTTACA TGTAAACAAC AAATCGCTGG AGGCTCCATG CACATAAACT TGAGAATTAA GAATTAAGGG 001360
001361 AGCCCAGTCT TAGGGGGCCC TACACTTTCA TGAACCTCCA AGAGCTCTGC CAGACGCTCT TATGCACATC AGAGAAAAAT 001440
001441 TCCCTCCTGC TTCCCACAGG GAAGGGGAAA AGTAACTACT TTGAAATATG CCCTGGGTGT TCCGTTCTCC TTAGCAAAAG 001520
001521 CCTGCCCCAG GGAAACCATT TCACAAGAGT CTAACCACCT TGGGCTTTAG CAGGGCCTAA CACCTGTTAG AATAAGAATA 001600
001601 AAAATTGCAT CAAACTTTTC TTCAGAACCC ATGCAAGCAA GCAAAAAAAT TCCACCAAAC TAAAATTCTG TATCCTGCAA 001680
001681 AATTATCTTT CCAAAGTGAA GAAAAAGACT TTCTCAGAGA AACACAAATT TGCTGTCAGT AGATCTGTCA AAATGTTAAA 001760
001761 AGAAGTTATC CAGAGAGAAG AAAATGATAT AGGCTAAAAA CT
[back to top]

Predicted Small Protein

Name NONHSAT081089_smProtein_974:1174
Length 67
Molecular weight 7571.3469
Aromaticity 0.166666666667
Instability index 48.7363636364
Isoelectric point 5.99847412109
Runs 13
Runs residual 0.0463618218109
Runs probability 0.0476064299594
Amino acid sequence MFSRFLHVAADGRISQSFMAETYSVVYLYGSFFIPEAVYGQLGSCHSCPHNDNKKHLEQT
ENYNFS
Secondary structure LLEEEEEELLLLLEEHHHHHHEEEEEEEEELEEELHHHHLLLLLLLLLLLLLLHHHHHHH
HLLLLL
PRMN -
PiMo -