NONHSAT081120
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081120 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1230 nt |
Genomic location |
chr21-:15196727..15197956 |
Exon number |
1 |
Exons |
15196727..15197956 |
Genome context |
|
Sequence |
000001 ATGCGGCGCT ACCCGCACGT GGTGGCGCTG TGTCTGGCCT GCGGCTTCTG CTCGCTCCTT TACGCCTTCA GCCAGCTCCC 000080
000081 CATGTCCCTG GAGGAAGCAG CAGGCGGTGG TGGCGGGAAG CAGCAGGCCT CAGTGGCTTC CTGGCTGGCA GGAGGCGGAT 000160 000161 GCGGTGCCGT GAGAGGCGCG GGCAGCGCTG GTCCTGCTGT GCATCCTGGT GGGTGGGACA GGTGTCGTCT GAAAATACAG 000240 000241 CCTGTTGAGA AAATGCATCT AGCTGTAGTT GCCTGTGATG AAAGACTGGA AGAAACTATG ACCACGTTGA AGTCAGCTAT 000320 000321 CATTTTTCAG GATCAAAGCT CTTCAATTCC AGGTTTTTGC TGAAGATCAG CTACATTATA GCTTTAAAGG AAGACGTGAC 000400 000401 AGGGGTCATT TCTGCAAATA TTTAATTATA CAATATACCC CATAACCTTT CCAAGTGAGA ATGCAGCAGC ATGGAAAAAC 000480 000481 TCTTTAAACC ATGTGGTCCG CAGAGATTGT TCTTGCCGTT ATTCCTGAAA GAAGTTGACT CCCACACTAA TAGCCTTTTT 000560 000561 TACGACCAGT TGATCATATT TGTTCTTTAC TAAAGAAATT TAATTCCACA TAAATTGCTC CAGTGGCCTC AGAACACAAG 000640 000641 GAACCTCAAA TAAGATGGTA TAGTCGCTTT GCTAGGCAAC CATACTGTGG AAAAACTGGA GTAAACCCTG GAATTATGTT 000720 000721 GATGAATATG ACTCGAATGA GAAGGAAGTA TTTCAAGAAT GATATGACAA ACTGTGTGAC TACAATGAAG AGATATACTT 000800 000801 ATGACATGGC TTAAAGAATA CAAACTAAAC ATTACATAGG CAATCAAGAT TTACATGGGC AATCAAGATT TGTTGGATAT 000880 000881 CATGTTTTTT CATAATCCAG AAAGTCTTTT TGCCTTTCCG TGTCAATGGA ATTATCATCC AGATCATTGT CTATATGGAA 000960 000961 GCAGTTGCCA AGAAGCAGAA GAAGGAATCT TGATTCTTCA GGGAACAGAG GTGTTTACCA TGATGATAAG CAACCAGCAT 001040 001041 TTAGAGCTGT TTATGAAGCA CTGAGAAATT GTTCTTTTAA GATGACAACA TTCATTCCCT AATAAAACCT TTAGAACTGG 001120 001121 AACTACAAAA AACAGTGCAT ACATACCGTG GAAAAATTTA CAAAATATTT GTCAAACAAC TAGCAAAAAC CATAAGAGAT 001200 001201 CATTATGCCA GATGACCAAA GGAAAGGTGA |
Predicted Small Protein
Name | NONHSAT081120_smProtein_854:1063 |
Length | 70 |
Molecular weight | 8079.1403 |
Aromaticity | 0.130434782609 |
Instability index | 45.947826087 |
Isoelectric point | 4.60467529297 |
Runs | 13 |
Runs residual | 0.0490744726647 |
Runs probability | 0.0451605451605 |
Amino acid sequence | MGNQDLLDIMFFHNPESLFAFPCQWNYHPDHCLYGSSCQEAEEGILILQGTEVFTMMISN QHLELFMKH |
Secondary structure | LLLHHHHHHHHHLLLHHHLLLLLLLLLLLLLLLLLLLHHHHHHLLEEEELLLLLLLEELH HHHHHHHHL |
PRMN | - |
PiMo | - |