NONHSAT081137
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081137 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2552 nt |
Genomic location |
chr21-:15349070..15352765 |
Exon number |
2 |
Exons |
15349070..15350878,15352023..15352765 |
Genome context |
|
Sequence |
000001 GCGGCAGAGG TTTCAGCAAC ACCAGTGGCC TACAAAGAAG GAGCCTTCCT CCTCTCCCCA GACTCCAGAC TCTAGAGGGC 000080
000081 GACCTCCTCC TGCTCCTGCT CCTGGAGCGC AGCCAGCGCA CAGCGTTTCC GCAGGAATCT TGAGAATGGC AAGGCCCGCA 000160 000161 CACCCGCGGT GGTTCCCAGG CCCGCCCCCT CTCGCAGCTG CAGCCCCACC TGCCAGTGCG TGCCGCCTCC GAGCGACTTC 000240 000241 CGGGAGCCGG GCGGCCACCG CGGTGCAGGC GCGCGCCCAA AGGCTTTGCG AGGCTCACTC GGTCTGAGAG GTCGGAGGCT 000320 000321 GCGAGTGTCG CTGCTGAAGG CTGTGGTGGA CCGGGCTGGA TCGCGGATTT TGGATTAGAT AATAGATTTG GGATCGCCGA 000400 000401 TTGGGGGTTG GATTGCGGAT TTGGGGTTGG ATAGGGGATT TGGGGCTGGG TCGGCGGGGG CAGGGGCGGG GAGGTGAAAA 000480 000481 GGTGACAGGG AGCTGCCTCC TCTCAAGAGC AGTTGGTTGG GAGTCTGAGA AGTCACCACC ATGAAGTTGT TCGGCTTCAG 000560 000561 GAGCCACAGG GGCCAGACGG TCCTGGGCAC CATAGACCAC CTGTACACGG GTTCCGGGTA CCGAATCCGG TACTCGGAAC 000640 000641 TGCAGAAGAT CCACAAGGCA GCTGTCAAGG GCGACGCCGC GGAGATGGAG CGCTGTCTGG CGCGCAGGAG CGGAGACCTG 000720 000721 GACGCCCTGG ACAAGCAGCA CAGAGTCTCA CTTCTTTGCC CAGGCTGGTG TCCAATGGCA CAATCTTGGC TCACTGCAAC 000800 000801 CGCTGCCTCC CGGGTTCAAG CAATTCTCCT CGCTCAGCCT CCCAAGTAGC TGGGGTTACA GGCAGGTGCC AGCATGCCTG 000880 000881 GCTAATTTTT CTATTTTTAG TAGAGAGGGG TTTCACCATG TTGGCCAGGC TGGTCTTGAA CTCCTGAGCT CAAGTGATCT 000960 000961 GCCTGCCTCG GCTTCCCAAA GTGCTTGGAT TACAGGCATG AGCTACCGTC CCCAGCCTAT ATTGTTTATT ATATATCATA 001040 001041 TGATATATAT ATTGCTGATA CATATACCAT ATATATTATT ACAGATATAA TCTGTTATAT ATATATCAGT TATATATACA 001120 001121 CATTAGATGA AAAGTTGTAT GTATATATAC ACATTAGATG AAAAGTACAT TTTCATTTTA CAGGGAATTC TTTCAAATCT 001200 001201 AATCATCAAA AACTTTAAAA TTGGGCAAAG TACTTTTTTC CAGATCTGCA AGTTATTTGT GTACATAGCA AAAAGTCCTT 001280 001281 CGCATTTCTG GTATAAGAAT TTAAATTAAA AGAGGAATGA AACAGTTTTC TATCCACAAT ATTTGTGAGG ATGTTTTATA 001360 001361 CTCCTGTTTA AAGTTTAAGT TGCTGATTAC TTTTCAAATA GGTAATTTGG TGGTAAGTAC TACATTTAAA AAATATGTAT 001440 001441 GCCCTTTACC CATCAATTCC ATTATACTAA AACACCCTTA GTAAATAAAG ATACATGCAC TTTATTTTTC ACAGCACTTA 001520 001521 TTTTAAAAAG AACCCATAGA ATGGATCCTA TAAATAAATT TCAGTTGCAT CCATAAGATG GAATAATATG TGACCATTGA 001600 001601 AGGTGGCAAT AGATACAGAA GTATATTGAT GTGCGAAAAT GTATTTTGTT ATAGCTAGTG AGGAAAAAAA TCAATTAAAT 001680 001681 TATACATACA CACAAACATA CTATGGTCTT GTTTTAGCAA AAAATATGTA CAAAATATAA AATTTGTAAT TTCTGAGCAT 001760 001761 TTGTATTTTA AGTAAAGTTC TTTTCCTTTT TCTTATCTGT GATTGCTGCA GTGAGCATGT ACAAAACTTC TAGTAAAGTT 001840 001841 TATTAATAAA GGAATAATCC TCAGGAAGAG AGGAATATGA ATCTTACATT ATTAAAAATA ATTTCTCACT TTCTATTTTT 001920 001921 ATCATTATTG TGTGTATTGT TATCTTCTTT GAACTTTTAG CCTCTTCAGA AGTAAAAAGG GAATGTTTTT ATCTGTTTCC 002000 002001 AGATTTTATT ACCTATATAT TTTATTATGT ACATATGTTT TTCTTATATA TTCATTCAAT TTATGCAAAC AATGATAGAT 002080 002081 TAATAATTTC ATTTTAATTG TATTCTTTAA AAATAAAAAT AATATATAAA TACTATTGCA AAAATATTGC TTTATAGGAG 002160 002161 TTTATTTAAA AATATCGATC TCCCCAACTG TATTTATCCA TTCTTTCATT CCATTTATTC ATCAAACATA ACCTGAGTAC 002240 002241 CTGTTATGTA GCAGACATAT TCTACTATCT CTCAGGACGC TTCTATCCTT AAAAACTACA TGTTTACCTG CCCTGCCTGC 002320 002321 ACAAGCTGAG AGATTTAATA TAGGAATATT GGGACTTAAT CTCCTTGAAA CTTTATCTCC CACCTTTCAA ACAAAAGCAT 002400 002401 TTCTGAAGTT AGAAAATAGT AGAAGATAAC CTTTAACTGC CCATTCAAAA GTTTATCAGT CTTAAATACT AATATTAATC 002480 002481 ATTGGAAAGT CTTATTTGCA TATATTCTGT AAGTATAAAT ATTGAATAAA ATGAGCCGTA TGTATTCATT TG |
Predicted Small Protein
Name | NONHSAT081137_smProtein_1316:1480 |
Length | 55 |
Molecular weight | 6240.5098 |
Aromaticity | 0.111111111111 |
Instability index | 43.6555555556 |
Isoelectric point | 9.21905517578 |
Runs | 13 |
Runs residual | 0.0780487804878 |
Runs probability | 0.0462000462001 |
Amino acid sequence | MKQFSIHNICEDVLYSCLKFKLLITFQIGNLVVSTTFKKYVCPLPINSIILKHP |
Secondary structure | LLLEEELLHHHHHHHHHHHLLEEEEEELLLEEEELEEEEEEELLLLLEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |