NONHSAT081288
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2341 nt |
Genomic location |
chr21+:18984091..18986432 |
Exon number |
2 |
Exons |
18984091..18986403,18986421..18986432 |
Genome context |
|
Sequence |
000001 GGCTGCGTGG ATAAAACCCA AAGGGAATCC AGAATCAAGC TCGGCCTCGC AGGAGTTTAT AACTTTTGTA CTTTTCCCTC 000080
000081 CCTTGTAACG AAAAGCTAAT CGCAAACGTT TCTAGGAACA CATTTTTCTC CTGATAGACG TTCCCAAGGT GGAGGGCGCG 000160 000161 AGAAGACTGG CCCGTGGGGT GAGGAGCCCC GGCCCGACCT CAGCGGCGCC ACAAAGCCAT GAAGAGGGGA AATAATTTTC 000240 000241 CAAGGGGCTA AGAGTTGGAC TTTCTGAAGC CATCGAAACC TGCTGCTAGG CTCTCCCGCT GGGGTTTTGA GAGAGGTAGG 000320 000321 TGAGGAGGGA TCAAACATCT CCACCCGCTC TTGAAAGAAC CGCCTTGAGC TGCGCCCAAC TTCTGCAATC CCGGTTTTCC 000400 000401 CCAAGTTCAA GGGGAAGGGC CCTGGCGCCC AATGCCCAGC CTCCCCGACA ACATCCTCGC CAGGGTGCGC CTGCCCCGCG 000480 000481 GGTCCGCTGT CCCCGGCGGG CGGCCCTGGG TTCGAGGACC CGGCTTCCCG GAGGCGCGAC TCTCCAGCAA ACAAGCGGAG 000560 000561 CTCCAGAAAA AACACCGACG CGAAGGGGGT GGACAGAGGG TGGGAAGCCG CGGGGTTGTC GCCCACCCGG AGGCGGAATG 000640 000641 TAACGCGCTG TGGGAAACGT GGCAGGAGCC CTGAGGCGGC GTCTTTTTCC TCAGGCGCCC GCCGAGGGTC CCGCGGAAAG 000720 000721 CCTCGCGGGC CGCCCTCGCG GCCCGCAGCC CCGCTCTGGC GCCGAGCCGG AGCCCATGCA ACCTGGTTCC ATCCCCTGCC 000800 000801 CCTCCCCTGT CCCCGGTGCG CCGCCCGCCA GCGAGCCTTC GACGTGGCCG CAGGGGCGAC GGGACCACCC TCCCCCGATA 000880 000881 CCCACAGCCC CGCCATGTCT GCCTTTCCCC GGCCCGGTCT CCTCACCGCC GCTGCCGCCG CCGCTCTTCG GCCGGAGATT 000960 000961 CGGCGGCCCA GACCGTGTCC TGGCCGGGAA CTGAGGGCTC CGCCTCAACG GGCCCGCGCT GGGCAACAGG GAGCGCAGCG 001040 001041 AGCCTCGTCC GGCGCGTGCG GCTCCCGCGT CGTCGGGCGG CCAAGCGCGC GTTGAGAGGA CTGGCGGGCG GACGAGCGCG 001120 001121 CACACGAGTG AGCGCAGCCC CAAAGCGGCG CGCAGGGGGC TCGCGGCCCG GAAGAGGGGA GGGGCGATGA CCCGGGAAAG 001200 001201 GGTTGGCGCG CGCGGGATCG GCTCGCGCGC CTGAGGGGCG GTGCCGGGGG CGGGGCTTCG CCGCGAGGCC ACCCCCGAGC 001280 001281 CCCGGGCCTA GCCGCACGGG AGGCGACACA CCCTCGCCCT ACCCTGAGCC TGGCGCAGAC CCTCGACCGC GACGGCGCGG 001360 001361 TCCGCAGAAC CGCGGGCTTC CCTCCCCGGC AAAAAGCGGC GCTGAAGGCC TGTGGGACCC CCGCCCGGCC GCCCTACGTG 001440 001441 CGTCAGCGCC TTCGGGGGTC GCGCGGGCTT GGTCCTTTCG GCTGTCTCGG CCTTTTTGTT TCCCCCTCAG GTCTCTCCAC 001520 001521 GCTGCACTTG ACACCCTCAG GGCGGAATGG CGAGTTCTAG ACCCAGCTCT CTAGACCCGG GGCTTCATGG GGGACACGGA 001600 001601 CTCGACGGGA AGGGGAACTT GGCATTTATG GACAGATCCT CATCCTTCTT GCTGTAGTCA ATTACACGCA CGTTAACCGT 001680 001681 GCAGCCGCCC TGCTGTATTT TAGGCGGTTG TTGGCACTCC TAGTTGGGCC CTTCCCTGGC CCCTCACAGC AGGGCCTGCC 001760 001761 TCCTGTGGAC GCTTGTGTGC TGCCCTGGCA CCGGCCACTG TGTTTTGCAT AAAGGAGAGG CTCCAAAGAT GTTGGCCAAA 001840 001841 GGAATGAAGC CTTGAGAGTC CAGGCTTTCT ATTTCTGAGA CACTCTACTC AAGGACTTCC CAGATGCAAA GCTTCATCTT 001920 001921 TGAGCAAATA CAAATATGGA GAGGGAACAT TAACTTTCTG AAGAAAAGAA GGAACATCTT TTCAACCTTT TATATTGAGT 002000 002001 TAACACCATG GTCTTAGTTT TGTGAAAGCA CTTTAATACA TCCAACTAGC GGGAGGAATA CAAGATATTC CTACCTTTTT 002080 002081 ATTATTATTA TTAAAAGAGG GCTAAACCAT GTTGTAAACT ACTTAAGAAC TGAATGTTCA AGTTGTACAG TATATTGGCC 002160 002161 AGATTCCTTA CTGCCCACTA GGCTTGGGAG CATGTTTTCA GCTCAGTTTT ATGAATGTTT TAAATTTGTA TTACTGATCT 002240 002241 TTGTTATAGC CAATTAGCAA TTCAAAATGG TAATTTTTTT AGCAGTAATA AATATACCAT CCCCCAAACA GTAAAAAAAA 002320 002321 AAAAAAAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT081288_smProtein_431:673 |
Length | 81 |
Molecular weight | 8803.8923 |
Aromaticity | 0.05 |
Instability index | 68.10625 |
Isoelectric point | 10.7201538086 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0468794586442 |
Amino acid sequence | MPSLPDNILARVRLPRGSAVPGGRPWVRGPGFPEARLSSKQAELQKKHRREGGGQRVGSR GVVAHPEAECNALWETWQEP |
Secondary structure | LLLLLLLEEEEEELLLLLLLLLLLLEELLLLLLLLLLLHHHHHHHHHHHHLLLLEEELLL LEEELLHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |