NONHSAT081288

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT081288

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2341 nt

Genomic location

chr21+:18984091..18986432

Exon number

2

Exons

18984091..18986403,18986421..18986432

Genome context

Sequence
000001 GGCTGCGTGG ATAAAACCCA AAGGGAATCC AGAATCAAGC TCGGCCTCGC AGGAGTTTAT AACTTTTGTA CTTTTCCCTC 000080
000081 CCTTGTAACG AAAAGCTAAT CGCAAACGTT TCTAGGAACA CATTTTTCTC CTGATAGACG TTCCCAAGGT GGAGGGCGCG 000160
000161 AGAAGACTGG CCCGTGGGGT GAGGAGCCCC GGCCCGACCT CAGCGGCGCC ACAAAGCCAT GAAGAGGGGA AATAATTTTC 000240
000241 CAAGGGGCTA AGAGTTGGAC TTTCTGAAGC CATCGAAACC TGCTGCTAGG CTCTCCCGCT GGGGTTTTGA GAGAGGTAGG 000320
000321 TGAGGAGGGA TCAAACATCT CCACCCGCTC TTGAAAGAAC CGCCTTGAGC TGCGCCCAAC TTCTGCAATC CCGGTTTTCC 000400
000401 CCAAGTTCAA GGGGAAGGGC CCTGGCGCCC AATGCCCAGC CTCCCCGACA ACATCCTCGC CAGGGTGCGC CTGCCCCGCG 000480
000481 GGTCCGCTGT CCCCGGCGGG CGGCCCTGGG TTCGAGGACC CGGCTTCCCG GAGGCGCGAC TCTCCAGCAA ACAAGCGGAG 000560
000561 CTCCAGAAAA AACACCGACG CGAAGGGGGT GGACAGAGGG TGGGAAGCCG CGGGGTTGTC GCCCACCCGG AGGCGGAATG 000640
000641 TAACGCGCTG TGGGAAACGT GGCAGGAGCC CTGAGGCGGC GTCTTTTTCC TCAGGCGCCC GCCGAGGGTC CCGCGGAAAG 000720
000721 CCTCGCGGGC CGCCCTCGCG GCCCGCAGCC CCGCTCTGGC GCCGAGCCGG AGCCCATGCA ACCTGGTTCC ATCCCCTGCC 000800
000801 CCTCCCCTGT CCCCGGTGCG CCGCCCGCCA GCGAGCCTTC GACGTGGCCG CAGGGGCGAC GGGACCACCC TCCCCCGATA 000880
000881 CCCACAGCCC CGCCATGTCT GCCTTTCCCC GGCCCGGTCT CCTCACCGCC GCTGCCGCCG CCGCTCTTCG GCCGGAGATT 000960
000961 CGGCGGCCCA GACCGTGTCC TGGCCGGGAA CTGAGGGCTC CGCCTCAACG GGCCCGCGCT GGGCAACAGG GAGCGCAGCG 001040
001041 AGCCTCGTCC GGCGCGTGCG GCTCCCGCGT CGTCGGGCGG CCAAGCGCGC GTTGAGAGGA CTGGCGGGCG GACGAGCGCG 001120
001121 CACACGAGTG AGCGCAGCCC CAAAGCGGCG CGCAGGGGGC TCGCGGCCCG GAAGAGGGGA GGGGCGATGA CCCGGGAAAG 001200
001201 GGTTGGCGCG CGCGGGATCG GCTCGCGCGC CTGAGGGGCG GTGCCGGGGG CGGGGCTTCG CCGCGAGGCC ACCCCCGAGC 001280
001281 CCCGGGCCTA GCCGCACGGG AGGCGACACA CCCTCGCCCT ACCCTGAGCC TGGCGCAGAC CCTCGACCGC GACGGCGCGG 001360
001361 TCCGCAGAAC CGCGGGCTTC CCTCCCCGGC AAAAAGCGGC GCTGAAGGCC TGTGGGACCC CCGCCCGGCC GCCCTACGTG 001440
001441 CGTCAGCGCC TTCGGGGGTC GCGCGGGCTT GGTCCTTTCG GCTGTCTCGG CCTTTTTGTT TCCCCCTCAG GTCTCTCCAC 001520
001521 GCTGCACTTG ACACCCTCAG GGCGGAATGG CGAGTTCTAG ACCCAGCTCT CTAGACCCGG GGCTTCATGG GGGACACGGA 001600
001601 CTCGACGGGA AGGGGAACTT GGCATTTATG GACAGATCCT CATCCTTCTT GCTGTAGTCA ATTACACGCA CGTTAACCGT 001680
001681 GCAGCCGCCC TGCTGTATTT TAGGCGGTTG TTGGCACTCC TAGTTGGGCC CTTCCCTGGC CCCTCACAGC AGGGCCTGCC 001760
001761 TCCTGTGGAC GCTTGTGTGC TGCCCTGGCA CCGGCCACTG TGTTTTGCAT AAAGGAGAGG CTCCAAAGAT GTTGGCCAAA 001840
001841 GGAATGAAGC CTTGAGAGTC CAGGCTTTCT ATTTCTGAGA CACTCTACTC AAGGACTTCC CAGATGCAAA GCTTCATCTT 001920
001921 TGAGCAAATA CAAATATGGA GAGGGAACAT TAACTTTCTG AAGAAAAGAA GGAACATCTT TTCAACCTTT TATATTGAGT 002000
002001 TAACACCATG GTCTTAGTTT TGTGAAAGCA CTTTAATACA TCCAACTAGC GGGAGGAATA CAAGATATTC CTACCTTTTT 002080
002081 ATTATTATTA TTAAAAGAGG GCTAAACCAT GTTGTAAACT ACTTAAGAAC TGAATGTTCA AGTTGTACAG TATATTGGCC 002160
002161 AGATTCCTTA CTGCCCACTA GGCTTGGGAG CATGTTTTCA GCTCAGTTTT ATGAATGTTT TAAATTTGTA TTACTGATCT 002240
002241 TTGTTATAGC CAATTAGCAA TTCAAAATGG TAATTTTTTT AGCAGTAATA AATATACCAT CCCCCAAACA GTAAAAAAAA 002320
002321 AAAAAAAAAA AAAAAAAAAA A
[back to top]

Predicted Small Protein

Name NONHSAT081288_smProtein_431:673
Length 81
Molecular weight 8803.8923
Aromaticity 0.05
Instability index 68.10625
Isoelectric point 10.7201538086
Runs 13
Runs residual 0.0236842105263
Runs probability 0.0468794586442
Amino acid sequence MPSLPDNILARVRLPRGSAVPGGRPWVRGPGFPEARLSSKQAELQKKHRREGGGQRVGSR
GVVAHPEAECNALWETWQEP
Secondary structure LLLLLLLEEEEEELLLLLLLLLLLLEELLLLLLLLLLLHHHHHHHHHHHHLLLLEEELLL
LEEELLHHHHHHHHHHHLLL
PRMN -
PiMo -