NONHSAT081356
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT081356 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2124 nt |
Genomic location |
chr21-:22114914..22175426 |
Exon number |
8 |
Exons |
22114914..22116151,22129629..22129735,22150736..22150865,22150961..22151080,22153667..22153792,22153888..22153979,22154568..22154764,22175313..22175426 |
Genome context |
|
Sequence |
000001 ACTGTGTGAT TTTTGTTCTT TAGTAGAAGG ATAACATGAC ATAGCAGGAA TAATACTGCC TTTTCTTTCT GGCATGGATC 000080
000081 AAGAGAAAAG AAAATACAAG AAAACAGACA GAAGCAAGGC AAGGTACTTC TATGGAAGGG TGAGCCCTCA CAGATGGAGC 000160 000161 AATGGGGCGC GCACACCTGA ACAAGGGAGG GGAAGGAGTT CTTATCCCTG ATGCATGTGA CCCCTGCTGC TGTGTCCTTC 000240 000241 CCCTATTGGC TAAGGTTAGA CCACACAGCC TAAACTAATT CCGATTGGCT AATTCAAAGA GAGCGACGGG GGCTTCTGAC 000320 000321 AGCTTTGGAG ATTGTGACAT TGGAATAAAG GAAAAACGTA CAGGACTCAT GAAGCGCTGA AATGTTCACA AATATCAAGC 000400 000401 AAAAGTCAAT GAAATTTATT TTGAGCTATT TACATCATTT AATAATTGAG CAAGGTATAC TCCTATGAAC AAAATTTGGA 000480 000481 GCATGTTTGT CTCTCTCTGC CTGGCGTCTT CAGAATTTGG AAACTAGTTA TGGTTTATAA TCAGCTATAG AATTTTAACA 000560 000561 CGTGCTCTCA AATGCAAGTT TCTGATAACT TTGGAGATTG TGACATTGGA ATAAAGGAAG AGCTGGAATG TTCATGAATA 000640 000641 TCAAGCAAAA GTCATGGAAA TTTATTTTGA GCTATTTACA GCATTTAATA ATTGAGCAAG GTATACTCCT ATGAACAAAA 000720 000721 TTTGGAGCAT GTTTGTCTCT CTCTGTCTGC CTGGCATCTA CAGAATTTGG AAACTAGTTG TGCTGTACTG CATGAGAATG 000800 000801 CCTGCATTTA GTATGCGAAC TGGAATTGGC AAAGGACGAT GGCTGCTCTC CCGCTAACTT TAAATAAGTC ATGTCACAAA 000880 000881 TTGCATTCGT TCCCAGATTT CCTAAACTTT CCAGAGAAAA TGGTCTTCTC CCTGGCTCAG CAAGAAGATG AACTTTAAAC 000960 000961 ACTGAGAAAC TGGTCATCTC CCTGGCTCAA CCAGAAGATG AACTTTAAAC ACTACTCTCA ATGACTTGAT GTTCCCATCA 001040 001041 CTACTCCTGT CATAAAGGGA GGGGACTCAG ATATTGAGAA TTTTATGATA GTGTGAACTG TCTGGTATGT CATTTAAGTA 001120 001121 AGCCCGTTGC TGAAATATTT TCCATGTTAT TAGAAAGAGC TGAAGAGAGG GATTGAGATG GCTTCTTTAT TTTTTGTCTT 001200 001201 TTGGGAATTA AAGGAACCTG GTTCAACAAG GGCCTACACC TAAGTCTCTT GTTGTACCAG AGTACAATTT AGGACTGCTC 001280 001281 CTGAGGAAGG AATTAGCTAG AAATCTAGAG AGTAAGGGTA ACAGATTTAC ATAGAATAAC AGCCTCAGTA TTTTTGGTTC 001360 001361 CTCTCCAGTA AAGATCACAA AGAATATTGC TAAATCGCTA AAACACCTTT GCAATAACGT AAGGGCTTAC AACTATATAC 001440 001441 CAATGTAGCT CAGTTACTAA ACTGGAGTAA ACTAATTTCT CTTGTGTAGA AAAATTGGTT GGCTGTGGTT TTATAGCAGA 001520 001521 TCTGCAATTA TTAATAGTTA TGCCAATAAT CGTTTAACAG TGCATATGTT AATATATATG GAAAGACAAT GTGTATAGAC 001600 001601 AGATGTGTAA AATTGAAAAA TAAACATATA ACAAGAGAGA AACATCTATC GAACAGACAA TATACATACA CATCAAACAC 001680 001681 AACAGCAGTT TTAGTGACCA TAATATTTAT TTCTCATTTT TACATTGCTT ACTTTAGTGA CAACTGAAAA TGACAGTTGG 001760 001761 CAATGCAGCT AACAGTTTCA ATAAAAGTAT AAAACAAAAG ACTGTGTACA AAGCACCTGT CTTTCCGCTT TTGTAATCTT 001840 001841 CCGTTGGAAA AAATTTACAC ACCTAAGTAA CCATCTGTTT TCTTCAAGAA AAAATCATTC TTATTTCTCT CTCTCATCTT 001920 001921 GAAAACAGCT GTCAGCCAGG AGGGCAGAGC TGAAATTTAT TGCCACATCA CATGAAGCAT AGAACAGACT CCACTACTCC 002000 002001 TTGAGATTCA AAACTTTGCC TCTCACAAAG TTACCTTTTA TTTTCCTCTT GTTTGTCACT CATCTCCCCT AGTGTGCTCT 002080 002081 TTTTATTTCT TTTACTATTA ATAATAAAAT CTGTGGATGA CTGT |
Predicted Small Protein
Name | NONHSAT081356_smProtein_710:856 |
Length | 49 |
Molecular weight | 5711.0484 |
Aromaticity | 0.145833333333 |
Instability index | 42.1791666667 |
Isoelectric point | 11.0101928711 |
Runs | 9 |
Runs residual | 0.0219298245614 |
Runs probability | 0.0352313097411 |
Amino acid sequence | MNKIWSMFVSLCLPGIYRIWKLVVLYCMRMPAFSMRTGIGKGRWLLSR |
Secondary structure | LLHHHHHHHHLLLLHHHHHHHHHHHHHHLLLLHHHLLLLLLLEEEELL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii |