NONHSAT081400

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT081400

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1725 nt

Genomic location

chr21-:23655297..23679053

Exon number

5

Exons

23655297..23656432,23658231..23658386,23666520..23666641,23667141..23667277,23678880..23679053

Genome context

Sequence
000001 TACCAATTGG AGGTTGTGGC AACCTTGCAT TGAGCAAGTC TTTTGGTGCC ATATTTCAAT CAACGTGTTC ATTTCATGTC 000080
000081 TCTGTGTCAC ATTTTGGTAA TTTTTACAAT ATTTCAAACA TTTTCATCAT TATTATATTT GTCATGGTGA TCTATGATTA 000160
000161 GCAATTTCTG CTGTCAACAC GCCCGGCTAA TTTTTTGTTT TTTTTTTAGT AGGGACGGGG TTTCACAGTG TTAGCCAGGA 000240
000241 TGGTCTCGAT CTCCTGCCCT CGTCATCTGC CTGCCTTGGC CTCCCAAAGT GCTGAGATTA CAGGCATGAG CTCACTTAAG 000320
000321 ATTTAGCTTA TGAAATGTGA ATTAACGTCA CTCTGGCATT TCGTAATGTG GGACCCAAGG CAAGTTACCT AAATAACTTT 000400
000401 GAGAAATATT TCCCAGATAA TTAAGTGGAT GCAAATTTTA GTGGGATTTA TAAATAATTG CATTCTTATT GTGGGAGATT 000480
000481 TATTGACATT TAAAGTAGAG ATAGGCAGGT ACATATATCT GCACAGTCAG TCCTCTGTAT CCATTGGTGC TTCATCTGTG 000560
000561 GCTTCAAAAT ATTCAGAGGA AAAACAAAGC ATACACCTTC ATTTGCTTTA CTAGTAAACA TTACCTGATC CCATAGCTTT 000640
000641 TTAAGGTATT CCTGAAAGTT TATCAAAAAT TTCCTTAAAT ATTTTAGAAA TTTGTTCACA GTATTTCTGT TCTTTTCTCT 000720
000721 TTTATGTTGA TGAAGGTTAC GAGACAACCA CATTTTGAGA CAACAGTAGT CTTTTGAGGA TTGACATTGT AGTAGCCTTT 000800
000801 CTTCCTGTAA GGGGAAGAGT ACTGGTTTTC ATATCTCTAT GACTAACTCC ACTTCAATCA TATTTCAAAA CATTTTTTAT 000880
000881 ACCTCCAAGG AGAGTAGTAA ACATGTTATA ACTCTATCGA GAAGGCCAAA TAATCATGAC AATGAAGTAC AACATTGAGT 000960
000961 GTCATGCATG CGTTGAGAGT TCCCTGGGGC CTTTCCAATA CAAATCATCT CTGTTTTCTC CTCAAAACCT GAAGAGGCTG 001040
001041 AGATTTGAAA TAAGGAGTCA ATATTAAGGA GAAAACATTA CCTCTGTTAT GATAGAACTA GGTAGGAGGA CATATGTTAG 001120
001121 CGTAAAAACT AACTGACCCC TTGAATTTAC AAGTAAGGAA ACTTAGCCAA GCTGTCAGAG GTAGTACTGG TATAAGTCAA 001200
001201 CAAGGCTTAG AGACCAGCAT AGCAAATAAA AATCACATAT TCTCTGTGGT CAGGCTGGAT CCCAGAGAAA AACAGCTGCA 001280
001281 CCAGTTATTT ATCTCAAATT TCCAAATCAT ATGTTTGGAA AATAGAGTAG ATAAAAAAGA AAAAAAGGCT GGGTGCAGTG 001360
001361 GCTCATGCCT GTAACCCCCG CACCTTGGGA AGCTGAGGCA GTTGGATCAC CTGAGTTCAG GAGTTCGAGA CCAGCCTGAC 001440
001441 CAACATGGTG AAACCCCGTC TCTACTAAAA ATACAAAAAG TAGCCAGGTG TGCTGGTGGG CGCCTGTAAT CCCAGGTACT 001520
001521 TGGGAGGCTG AGGCAGGAGA ATCACTTCAA CCCAGGAGAT GGAAGTTGCA GTGAGCTAAG ATTGTGCCAC TGTACTCCAG 001600
001601 CCTGGGCCAC AAGAGTGAGA CTTCATCTCA AAAAAAAAAA AAAAAAAAGA AAAGAAGGAA AGTAGAAGAA AACCTTGGGA 001680
001681 CTGATAAAAT TTCATTCTCC CAATGTAGAC TATATTTATC TTCTC
[back to top]

Predicted Small Protein

Name NONHSAT081400_smProtein_428:613
Length 62
Molecular weight 6827.8745
Aromaticity 0.0983606557377
Instability index 47.2426229508
Isoelectric point 6.80902099609
Runs 14
Runs residual 0.0766911626154
Runs probability 0.0536376712847
Amino acid sequence MQILVGFINNCILIVGDLLTFKVEIGRYIYLHSQSSVSIGASSVASKYSEEKQSIHLHLL
Y
Secondary structure LEEEEHHHHLLEEEELLLEEEEEEELEEEEEELLLEEEEEEEEEEELLLLLLLEEEEEEE
L
PRMN LLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
L
PiMo oooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
i