NONHSAT081400
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081400 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1725 nt |
Genomic location |
chr21-:23655297..23679053 |
Exon number |
5 |
Exons |
23655297..23656432,23658231..23658386,23666520..23666641,23667141..23667277,23678880..23679053 |
Genome context |
|
Sequence |
000001 TACCAATTGG AGGTTGTGGC AACCTTGCAT TGAGCAAGTC TTTTGGTGCC ATATTTCAAT CAACGTGTTC ATTTCATGTC 000080
000081 TCTGTGTCAC ATTTTGGTAA TTTTTACAAT ATTTCAAACA TTTTCATCAT TATTATATTT GTCATGGTGA TCTATGATTA 000160 000161 GCAATTTCTG CTGTCAACAC GCCCGGCTAA TTTTTTGTTT TTTTTTTAGT AGGGACGGGG TTTCACAGTG TTAGCCAGGA 000240 000241 TGGTCTCGAT CTCCTGCCCT CGTCATCTGC CTGCCTTGGC CTCCCAAAGT GCTGAGATTA CAGGCATGAG CTCACTTAAG 000320 000321 ATTTAGCTTA TGAAATGTGA ATTAACGTCA CTCTGGCATT TCGTAATGTG GGACCCAAGG CAAGTTACCT AAATAACTTT 000400 000401 GAGAAATATT TCCCAGATAA TTAAGTGGAT GCAAATTTTA GTGGGATTTA TAAATAATTG CATTCTTATT GTGGGAGATT 000480 000481 TATTGACATT TAAAGTAGAG ATAGGCAGGT ACATATATCT GCACAGTCAG TCCTCTGTAT CCATTGGTGC TTCATCTGTG 000560 000561 GCTTCAAAAT ATTCAGAGGA AAAACAAAGC ATACACCTTC ATTTGCTTTA CTAGTAAACA TTACCTGATC CCATAGCTTT 000640 000641 TTAAGGTATT CCTGAAAGTT TATCAAAAAT TTCCTTAAAT ATTTTAGAAA TTTGTTCACA GTATTTCTGT TCTTTTCTCT 000720 000721 TTTATGTTGA TGAAGGTTAC GAGACAACCA CATTTTGAGA CAACAGTAGT CTTTTGAGGA TTGACATTGT AGTAGCCTTT 000800 000801 CTTCCTGTAA GGGGAAGAGT ACTGGTTTTC ATATCTCTAT GACTAACTCC ACTTCAATCA TATTTCAAAA CATTTTTTAT 000880 000881 ACCTCCAAGG AGAGTAGTAA ACATGTTATA ACTCTATCGA GAAGGCCAAA TAATCATGAC AATGAAGTAC AACATTGAGT 000960 000961 GTCATGCATG CGTTGAGAGT TCCCTGGGGC CTTTCCAATA CAAATCATCT CTGTTTTCTC CTCAAAACCT GAAGAGGCTG 001040 001041 AGATTTGAAA TAAGGAGTCA ATATTAAGGA GAAAACATTA CCTCTGTTAT GATAGAACTA GGTAGGAGGA CATATGTTAG 001120 001121 CGTAAAAACT AACTGACCCC TTGAATTTAC AAGTAAGGAA ACTTAGCCAA GCTGTCAGAG GTAGTACTGG TATAAGTCAA 001200 001201 CAAGGCTTAG AGACCAGCAT AGCAAATAAA AATCACATAT TCTCTGTGGT CAGGCTGGAT CCCAGAGAAA AACAGCTGCA 001280 001281 CCAGTTATTT ATCTCAAATT TCCAAATCAT ATGTTTGGAA AATAGAGTAG ATAAAAAAGA AAAAAAGGCT GGGTGCAGTG 001360 001361 GCTCATGCCT GTAACCCCCG CACCTTGGGA AGCTGAGGCA GTTGGATCAC CTGAGTTCAG GAGTTCGAGA CCAGCCTGAC 001440 001441 CAACATGGTG AAACCCCGTC TCTACTAAAA ATACAAAAAG TAGCCAGGTG TGCTGGTGGG CGCCTGTAAT CCCAGGTACT 001520 001521 TGGGAGGCTG AGGCAGGAGA ATCACTTCAA CCCAGGAGAT GGAAGTTGCA GTGAGCTAAG ATTGTGCCAC TGTACTCCAG 001600 001601 CCTGGGCCAC AAGAGTGAGA CTTCATCTCA AAAAAAAAAA AAAAAAAAGA AAAGAAGGAA AGTAGAAGAA AACCTTGGGA 001680 001681 CTGATAAAAT TTCATTCTCC CAATGTAGAC TATATTTATC TTCTC |
Predicted Small Protein
Name | NONHSAT081400_smProtein_428:613 |
Length | 62 |
Molecular weight | 6827.8745 |
Aromaticity | 0.0983606557377 |
Instability index | 47.2426229508 |
Isoelectric point | 6.80902099609 |
Runs | 14 |
Runs residual | 0.0766911626154 |
Runs probability | 0.0536376712847 |
Amino acid sequence | MQILVGFINNCILIVGDLLTFKVEIGRYIYLHSQSSVSIGASSVASKYSEEKQSIHLHLL Y |
Secondary structure | LEEEEHHHHLLEEEELLLEEEEEEELEEEEEELLLEEEEEEEEEEELLLLLLLEEEEEEE L |
PRMN | LLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL L |
PiMo | oooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii i |