NONHSAT081455

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT081455

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2730 nt

Genomic location

chr21+:26212864..26430059

Exon number

4

Exons

26212864..26213042,26217093..26217243,26402097..26402172,26427747..26430059

Genome context

Sequence
000001 GAAGGGCTCC TGGAACGCGG CCAGAGCGGA CGCAGAGGCC AAGGAGGCGC CGAGAGCCCA GAGCGAGCAA GGGCTGCTAG 000080
000081 CACGTTTTCA CCTCTCAATA GGAGGAAGTA AAGGAAATTT TACCTACAAA ATAGCAATAC TAAGCTTTAC AGCTGACATT 000160
000161 ACAACAGCAA CAAGAAAAGG CTAGTGATAT GCAGTATGAT GCTCTCTCCA GATGCTAGGC AGTCAGCCAG CAAATCAGTA 000240
000241 GGATAAACAA CCGACGTTCT TCAGCGTACC GTGTTGTCAG ATGATTCTGC CCAGCTGCAG GCTAATGTAA GTGTCCTGAG 000320
000321 GATGTTCAAG TGCTGAAATC AAGACGTCAA CCAGCTGGTC TTTTTTCGGG AGGATCTGAG AAAAATCTGC TTTCAAGTCC 000400
000401 ATTTAGATTC TTTGTCTTTT TCTATGGACC AATTGTCATC TTTCCTAACA GAAGACTACG CATCCCTGTG ATACCTCTCA 000480
000481 GATGACAACA AAGTTCTGTA AGGTTTCTTG TGTGGAAATG ACAGGACACA TCCTCAAATC CTGCCAGCAT TTGTTTAGTA 000560
000561 AGAGTGCTGG ATCATTTGAG GGTTACTTTT AAATTTCCTG AGCCAATGGT CCTCCTAAGC CAACTATTCA TTCTGTGTAA 000640
000641 TGGCTGATGA AATTAACAAG GGACAAACCA AATCCCAATT GCCTATAGAG CGGTACATCA AAGATATGCA TATCCAAAAC 000720
000721 ATAGATAAAA TCATATATAC TATCTTGTAG TGTGGTTTTT GTCTGGAGAT GTTTTCATTT TTTACTCTTT CTAGACCAAT 000800
000801 AAGCCACACA GAATGATTTA CATTAGTGTT GATGGGCCAG ATGGTTTTGA ACAACATTGA TACCATTTAA TAGGCATAAG 000880
000881 ATATACTTTA GGTTTTATTT AATGTTTATG TCATCTTTAT GTAACTATAT TAGGGTAAAT AAATGATAAA TGCTTACAAT 000960
000961 TTTCAAGTAA ATAGTAAAAT AGTCAATAGT TCTTGGATAT GCAATTGCAG TATTCCACAG TCAACAGAAT CAGTATTAAA 001040
001041 ACCAGCTTAA CTTCTATGAC AAGCAAATAT AAGTACCCTA GAAATATGTT GGCTTTCATA ATGAAGCTAT ATTAATATAC 001120
001121 AACATTGAAT GTATATTCTA CAAATTGAAA TTTTTAAAGA AATAAGCTGG CTGCATTTAT AGATCTCCTA GGAGACTTCC 001200
001201 ACTCCATGTG ACCTTAGAGA TCATCATTTT TATCATTTTA CAGTGTAGCT TACCATCACA TTTTAAAGCG CATTTACCAT 001280
001281 CACATTTAAT TTAATAAGAA TAGTGTCTTT AAGTTGGATT TAATTATCCC AATGTTTCAA GTGATAAAAT TGGGGATCTG 001360
001361 AATTTTAAAT AATTTGTTTC AGGACACAAA GATACAAAGT GGCATGAGCC ATGATTTAAA CACAAGTGTG TTGTAGGAGA 001440
001441 CTGCATCGCA CAAGGCGCTA AAGTGACCTG CATAATTTTT TTTCTTTTTT TATATGGAGT CTCGTTCTGT CACCCAGGCT 001520
001521 GGCGTGCAAT AGTTCAATCT CGGCTCACTG CAACCTCCGC CTCCCAGGTT CAAGCGGTTC TCCTGCCTAA GCCTCCAGAG 001600
001601 TAGCTGGGAT TACAGGCACG CACAACCATG CCCGAGTAAT TTTTGTATTT ATTTTATTTT ATTTTTTTTA GTAGAGACGA 001680
001681 GGTTTTCCCA CGTTGGTCAG ATAGGTCTCA AACTCCTGAC TTCAGGTGAT CCGCCTGCCT CGGCCTCGGA AAGTGCTGGG 001760
001761 ATTACGGGGG TGAGCCACTG CGCCCGGCCC CTGCATTAAT TTTTTAGGCA TTCACTCCAC AAAGGGCTCA CTGGCATTTT 001840
001841 TCACAACACT GATTTGTTTT CTTGCAAAGA TGTAGACATT CCTTTCTGCC ACACATCTAT GGTCTACAAT AAGAACCCAG 001920
001921 TGTTTCTCCA GCATGGATAG AGTGAGGCTT GTAATTTCCT CTGTGAAGCA ACTTAGCTGA TGTGGAGGAA TGGTTCTCAG 002000
002001 CATACACTTG ATTATTTTTC TTCATTTTCA AAGTCAAGCA TATCTTTTGC AAAATGCTGC AGGCTTTTTG TTTGTTTGTT 002080
002081 TGTTGTTTGT TTTGCTTTTT ACTCTTGCCA CAACACAAAT GTTTTACTCC TTTTCTAACA CAAATTTTCA TTACCTACAT 002160
002161 CCAATGTACT GAAAGGCTTA AAAATGAAAC ACTGTCTAAG CCTTTGAGAT ATAAAATTGA ATTAGATTTA CACTACACAA 002240
002241 AGCTGTCTCT CTATAGTCCA CATAATCTCT CCCATCTCAA AAATTACATT GCTAATATAT ATGAACTGAA AGAGAAGCCA 002320
002321 ATTCAGGAAG GAGCTGATTC AAGAAGTGCA AAGAGATAAT CCCATTACAA TGAGTTTTCA ACTCAATTAA ATAAGGCTCA 002400
002401 AGAGACTGGG CAAATTATTG GGGCTATTCA TATCATTTCA TTAGAGCAAA ATTTCACTGT AATGAAAAGA GAAGTTATTA 002480
002481 GCTAGACCTT GAAAAGGCAA TTCAAGATTA TTTTTCTAAT GTGATTTGAC TTGTTTATAA GTATTTCTTA AAGCTAGTTT 002560
002561 TATCTGTCAT AGCTTATTAT AAGAGGTTTC ATTATTGTTT TTCAAGAAAT GCCAAATTGC TAAATCTCAA TGGGGAGCTT 002640
002641 CATGTGTATA TGTCTGAAGA GCAAAGACTA CATGCATTTT TATTTGTATG TATGTTAATA AACACCATTT TCCGAAAAAA 002720
002721 AAAAAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT081455_smProtein_1979:2137
Length 53
Molecular weight 6070.052
Aromaticity 0.211538461538
Instability index 41.4944230769
Isoelectric point 8.75225830078
Runs 9
Runs residual 0.0227075184702
Runs probability 0.0817582288171
Amino acid sequence MWRNGSQHTLDYFSSFSKSSISFAKCCRLFVCLFVVCFAFYSCHNTNVLLLF
Secondary structure LLLLLLLLHHHHHHHLLLLLHHHHHHHLLEEEEEEEEEEEEELLLLEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooooo