NONHSAT081455
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081455 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2730 nt |
Genomic location |
chr21+:26212864..26430059 |
Exon number |
4 |
Exons |
26212864..26213042,26217093..26217243,26402097..26402172,26427747..26430059 |
Genome context |
|
Sequence |
000001 GAAGGGCTCC TGGAACGCGG CCAGAGCGGA CGCAGAGGCC AAGGAGGCGC CGAGAGCCCA GAGCGAGCAA GGGCTGCTAG 000080
000081 CACGTTTTCA CCTCTCAATA GGAGGAAGTA AAGGAAATTT TACCTACAAA ATAGCAATAC TAAGCTTTAC AGCTGACATT 000160 000161 ACAACAGCAA CAAGAAAAGG CTAGTGATAT GCAGTATGAT GCTCTCTCCA GATGCTAGGC AGTCAGCCAG CAAATCAGTA 000240 000241 GGATAAACAA CCGACGTTCT TCAGCGTACC GTGTTGTCAG ATGATTCTGC CCAGCTGCAG GCTAATGTAA GTGTCCTGAG 000320 000321 GATGTTCAAG TGCTGAAATC AAGACGTCAA CCAGCTGGTC TTTTTTCGGG AGGATCTGAG AAAAATCTGC TTTCAAGTCC 000400 000401 ATTTAGATTC TTTGTCTTTT TCTATGGACC AATTGTCATC TTTCCTAACA GAAGACTACG CATCCCTGTG ATACCTCTCA 000480 000481 GATGACAACA AAGTTCTGTA AGGTTTCTTG TGTGGAAATG ACAGGACACA TCCTCAAATC CTGCCAGCAT TTGTTTAGTA 000560 000561 AGAGTGCTGG ATCATTTGAG GGTTACTTTT AAATTTCCTG AGCCAATGGT CCTCCTAAGC CAACTATTCA TTCTGTGTAA 000640 000641 TGGCTGATGA AATTAACAAG GGACAAACCA AATCCCAATT GCCTATAGAG CGGTACATCA AAGATATGCA TATCCAAAAC 000720 000721 ATAGATAAAA TCATATATAC TATCTTGTAG TGTGGTTTTT GTCTGGAGAT GTTTTCATTT TTTACTCTTT CTAGACCAAT 000800 000801 AAGCCACACA GAATGATTTA CATTAGTGTT GATGGGCCAG ATGGTTTTGA ACAACATTGA TACCATTTAA TAGGCATAAG 000880 000881 ATATACTTTA GGTTTTATTT AATGTTTATG TCATCTTTAT GTAACTATAT TAGGGTAAAT AAATGATAAA TGCTTACAAT 000960 000961 TTTCAAGTAA ATAGTAAAAT AGTCAATAGT TCTTGGATAT GCAATTGCAG TATTCCACAG TCAACAGAAT CAGTATTAAA 001040 001041 ACCAGCTTAA CTTCTATGAC AAGCAAATAT AAGTACCCTA GAAATATGTT GGCTTTCATA ATGAAGCTAT ATTAATATAC 001120 001121 AACATTGAAT GTATATTCTA CAAATTGAAA TTTTTAAAGA AATAAGCTGG CTGCATTTAT AGATCTCCTA GGAGACTTCC 001200 001201 ACTCCATGTG ACCTTAGAGA TCATCATTTT TATCATTTTA CAGTGTAGCT TACCATCACA TTTTAAAGCG CATTTACCAT 001280 001281 CACATTTAAT TTAATAAGAA TAGTGTCTTT AAGTTGGATT TAATTATCCC AATGTTTCAA GTGATAAAAT TGGGGATCTG 001360 001361 AATTTTAAAT AATTTGTTTC AGGACACAAA GATACAAAGT GGCATGAGCC ATGATTTAAA CACAAGTGTG TTGTAGGAGA 001440 001441 CTGCATCGCA CAAGGCGCTA AAGTGACCTG CATAATTTTT TTTCTTTTTT TATATGGAGT CTCGTTCTGT CACCCAGGCT 001520 001521 GGCGTGCAAT AGTTCAATCT CGGCTCACTG CAACCTCCGC CTCCCAGGTT CAAGCGGTTC TCCTGCCTAA GCCTCCAGAG 001600 001601 TAGCTGGGAT TACAGGCACG CACAACCATG CCCGAGTAAT TTTTGTATTT ATTTTATTTT ATTTTTTTTA GTAGAGACGA 001680 001681 GGTTTTCCCA CGTTGGTCAG ATAGGTCTCA AACTCCTGAC TTCAGGTGAT CCGCCTGCCT CGGCCTCGGA AAGTGCTGGG 001760 001761 ATTACGGGGG TGAGCCACTG CGCCCGGCCC CTGCATTAAT TTTTTAGGCA TTCACTCCAC AAAGGGCTCA CTGGCATTTT 001840 001841 TCACAACACT GATTTGTTTT CTTGCAAAGA TGTAGACATT CCTTTCTGCC ACACATCTAT GGTCTACAAT AAGAACCCAG 001920 001921 TGTTTCTCCA GCATGGATAG AGTGAGGCTT GTAATTTCCT CTGTGAAGCA ACTTAGCTGA TGTGGAGGAA TGGTTCTCAG 002000 002001 CATACACTTG ATTATTTTTC TTCATTTTCA AAGTCAAGCA TATCTTTTGC AAAATGCTGC AGGCTTTTTG TTTGTTTGTT 002080 002081 TGTTGTTTGT TTTGCTTTTT ACTCTTGCCA CAACACAAAT GTTTTACTCC TTTTCTAACA CAAATTTTCA TTACCTACAT 002160 002161 CCAATGTACT GAAAGGCTTA AAAATGAAAC ACTGTCTAAG CCTTTGAGAT ATAAAATTGA ATTAGATTTA CACTACACAA 002240 002241 AGCTGTCTCT CTATAGTCCA CATAATCTCT CCCATCTCAA AAATTACATT GCTAATATAT ATGAACTGAA AGAGAAGCCA 002320 002321 ATTCAGGAAG GAGCTGATTC AAGAAGTGCA AAGAGATAAT CCCATTACAA TGAGTTTTCA ACTCAATTAA ATAAGGCTCA 002400 002401 AGAGACTGGG CAAATTATTG GGGCTATTCA TATCATTTCA TTAGAGCAAA ATTTCACTGT AATGAAAAGA GAAGTTATTA 002480 002481 GCTAGACCTT GAAAAGGCAA TTCAAGATTA TTTTTCTAAT GTGATTTGAC TTGTTTATAA GTATTTCTTA AAGCTAGTTT 002560 002561 TATCTGTCAT AGCTTATTAT AAGAGGTTTC ATTATTGTTT TTCAAGAAAT GCCAAATTGC TAAATCTCAA TGGGGAGCTT 002640 002641 CATGTGTATA TGTCTGAAGA GCAAAGACTA CATGCATTTT TATTTGTATG TATGTTAATA AACACCATTT TCCGAAAAAA 002720 002721 AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT081455_smProtein_1979:2137 |
Length | 53 |
Molecular weight | 6070.052 |
Aromaticity | 0.211538461538 |
Instability index | 41.4944230769 |
Isoelectric point | 8.75225830078 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0817582288171 |
Amino acid sequence | MWRNGSQHTLDYFSSFSKSSISFAKCCRLFVCLFVVCFAFYSCHNTNVLLLF |
Secondary structure | LLLLLLLLHHHHHHHLLLLLHHHHHHHLLEEEEEEEEEEEEELLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooooo |