NONHSAT081644
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081644 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6033 nt |
Genomic location |
chr21-:30756061..30882561 |
Exon number |
20 |
Exons |
30756061..30756086,30756095..30756792,30760843..30761303,30788743..30789247,30795887..30796316,30825520..30825702,30826451..30826559,30829227..30829516,30829854..30830089,30842343..30843010,30846170..30846342,30849528..30849990,30855580..30855788,30859814..30860025,30860032..30860044,30870866..30871430,30877182..30877711,30878969..30878983,30878992..30879058,30882376..30882561 |
Genome context |
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Sequence |
000001 GTTCTCCCTT ATTTTCAAAT TAGCACAGCT TAGAGCCAGG ATGATGGAAG ATTCAGTGCT GAGAGAAAGA AGACCCATTT 000080
000081 CCCAAGAGTA GTATCTTCAA ATGCAGACAT TCACACAGTT GCTTTTTATC ATTATTTGGG TCAAAAGTGC ATGACATATG 000160 000161 GAAAAACAAC AGAGGACATA CTATCTTCTT TTAGCCTTTT TCCAACTCTG CCCCTTTGCC CAAGGGTCTG GCTCTTTCAT 000240 000241 TAATTCCTGC AGGAAGACTT CTATTTTTTT TGTTTGTTTT CTTTTTTTTC TTTTTGAGCT TATATTCTCC TGGGATTTCA 000320 000321 AAAATATAAC CTCAGGATAT CTCTTCTCCC TTACCTTCCA TACTTGTTAC TATGTTTATG TTGGTGGGGT GACTTACTTG 000400 000401 GTGCTGAAGT GTTGGGGTGA CAAGGGCAGG GGAAGTCTCT GTGTCCCTAG CGGTGAATCC ATCCAAGAGG CTTCAAGATG 000480 000481 GCTGTCACTC TTATCCACAG AGCTTCATTT AGGCTTGATG ACTCAGGCTC TCTGCTGGTT CCCTGCCATA CCTGAAGGCA 000560 000561 CAGAACTCAT TCCATTGCTT GCTGTGGTTG GCTGGTAACT AGCAATTTCT GTTATCTATC TGTGGGCTAC TTGTCTGGCC 000640 000641 TTACATTACA GCCATTCTCT CTCTGGGAGC TTCTGCCTCA TCAGGGCACC CTTCTCTCTC TGGCCCCACA AATCAATGTA 000720 000721 GTGTTTTGCA TTTTTCCTAC TGTGGACTAT GCCCCAAAAC CATTGTTCTA ATCACTACAA TCATTACTAA CCATCTGGTT 000800 000801 TTTTTATCTC TTCCTCCAAT CAATCCCTCA AATTCCACCA CCATCCACAT TCTCCCGGGC TCCTGACAAT TATGTTTAGC 000880 000881 CCAACTCTAA CCACAGGCTT CAGAGGCTGT TTCCTCCTGA TTTTCCAAAT GAGGCAAAAT TGGAACCTCA TTTTTGTGAG 000960 000961 CTTCAAGCTC ACAACCAGCA GCAACTCAGC GCATGCTTCT GCACACATGA TGTGGACGTG CTTTTAATCT TTCTTGTACC 001040 001041 TTTATAAGCA GATCCTCCCA GGCTTCTGCA GTGTAGGAGA ACGGATATGG TTTTATTAAA AATAGTGTCT CAATTTCAAT 001120 001121 AGCTCTAAGT TCCCACCTGC TTGATGGCAG TGCTGAAGGG AGCCCCTCAG AGCCTCCTCT GCTATTCCAG GCATTCCAGG 001200 001201 GTGGCTTTGC AGGACAGCAA GGAGGAAATC TGCTCCTGGA CTTTGATTTC AACCTCATCT GCTGTCCACT GCCTGTACCA 001280 001281 CAGAAGGCAC CTTGATGAGA TATTGCTCCA TGGCTTTCAG ATCCTCTGAG AGAATAGGGG TCATGGATCT CTCCACTACA 001360 001361 ACTACATCTC ATTTCTGACT TTTTTTAAGT GCCTTTGAAA CCTCAACACT CTTCTTTGGG TAAATTAAGT AGTTCAATGA 001440 001441 GTAGGTCCCT CATTATTACT TTAAATAATC AAGAGTTCCA ACCTGATTTC TACAATCATT TTTATTTTGT CTCTAGTTAA 001520 001521 ATACTACTTG AATGAATGAG AGTGGTCTCT TTTTCCATAA CAATGCAATT TTAAATGTTT CAATACCTCA TTACCTTAGC 001600 001601 TTTGAAGCTT CTCTTACATT TTCTTTCTTA TATGTCAGTT CAAGAAACGG GCTTTCAGAG ACAAGTACAC TGACCCTCTC 001680 001681 AGCCAATGAT CCACCAAGTG ACTATTCCAC ACGTAGGCAG CTGTACACAT AGCCACTTGC CGGGGGGAAA GAAAATCAAT 001760 001761 TCATTCCAGA AGATTATTGA AGCTATTTTA TTTTTTCCTT CGGAGCTCTT CCTTCAGTGT GTGATTACAC ATGCACTCCT 001840 001841 TTGGGTGTTT TGTTTGAAAT CAAGGTTGTT TTATCCACCT GACCATATGT GCTATGAGCT CGGGGAGCAC ACCTGGTTGT 001920 001921 TCTCAGCATG TCACCCAGCT GGACCTGCAA AGAGTGCCAC ATATGCAGTA TCCATTGCCT GAACAAGTGA CTCCCTCTAA 002000 002001 AATTCACAAC AAAGCTAATA GCTGTTGTGC CTGAGGACAT ACAGCAAGTG CAGCCACAAA CATCAGGTCA GACATTAGAA 002080 002081 AGCGGCGCTC AAACTTCATG GCTTTCTAAG TCCCCATGCC ACCAACCCTT CTGGACAACA GCTGACTTCC ATTTCTAAAG 002160 002161 AACCATAAAA AGGTCATTGG TTTGCAAAAT CAAAATTTGT TCTGGGTGCT ACTGTGCCCT CATAAATGAA ATTTTGTTAT 002240 002241 TAAAGGAATG AACCTATTGG CAGTGTGCCT AGTCCCAGAG AACAAACAAT GTTTGGTGTC AGAGTGCTGC AGTCACTCTG 002320 002321 CAGAAGCAGA ATGGACATCA CCCAGAATTT GGTCCTGATG TTGAGACTGC TGACACCATA CGCACACCTA GGGGGTATGA 002400 002401 AATTGTTTAT TATTCACAAG AGAAGGCTTT CCTTCTGCCT CTAAATACAC TCTTTTCTCA CAAGGGTCGA AATGGCTTTC 002480 002481 ATTTTTGTAC AAAGTCCACA TCCCATACAC TCCCCCTTCT GAATGACTTT GAACTTAAAA TATGTTTGTT TGTTTAACTT 002560 002561 AAGCCACTTC AGTCCATTTA CTTCTTTACT TATCTCTTCC CTGCACCAAT TACTCACCCT CCTTTTAGTA GCAGCCATTA 002640 002641 ATATTCTCCA TTAATGGTCT CTTTCCAAAA CCTAGTCCCT CAGAAATTTC CTTCACCAAG ACTCTCCTTT GAAAATATCT 002720 002721 ACTCCCAAAG GTCTACACTC ATCTCTTTGA GCAGCATCTT TCCTAAATAT GTGTAATAAT AAATTTAGCC CTGGCTAAGA 002800 002801 AACTTGAAGA AGTGATCAAG GATCATTTTA AAGAAAAATG ATAAACAATG AACAAAAGGC AACCTGAGTC TGAAGAGTTT 002880 002881 AATAAAGGGC TCAGGCCGGG TTCAGTGGCT CATGCCCATA ATCCCAGCAC TTTGGGAGGC CGAGGCGGGT GGATCACCTG 002960 002961 AGATCAGGAG TTTGAGACCA GCCTGGCCAG CATGGTGAAA CCTCGTCTCT ACTAAAAGTA CAAAAATTAG CAGGGCGTGG 003040 003041 TGGTGCATGC CTGTAATCCC AGCTACTCAG GAGGCTGAGG CAGGAGAATC ACTTGAACTT TCTGTTTGTG ACACAAACAG 003120 003121 CCATTAGAGA GAAATGATTA GCTATTATAC TTCTCAGTGG TGGTTAGCAA TGGTCTATAA TTATTCATTT CTATTAGGAG 003200 003201 CCATTAGCCA TTAATTCCAT GTATTAGAAT TTTGAGAGCA GCTTGACCAC ATTGATTCCT GGGTCTACAT TTAAAATAGA 003280 003281 TGTGAGAGAG AGAGAGAGAC AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGATTAAA TGAGTTCGTT ATTGTTAAGC 003360 003361 ACTTAACTGT CATCATCATC ATCCCACAGA TGTAGACACC GATGTCCAGG TAGGCGATGT GATTTGTCCA AATCATAAAA 003440 003441 CTAGCATTAA GCACGCAGAA GAACCCAAAT CTCTTGACAA CTAGCCCTGA GTTCCTTCCA CTGTGCCATG CTGCCTGTAT 003520 003521 TGTTCTATAC TACGCCATAC TTTCTGATGC ATAAAGTCCT TATCAGGTAC ATAACTTATG AAGGAAAGAA CTCAGAAAGA 003600 003601 AGAAGGCCTA ATGATGCCAT TGATATAATA CCAGCATTAG ACATTGGTAG CCATACCTTG TGTCACCCCC CTAAACCCCA 003680 003681 TCTTTATTGA ATGAAGCAAG TGAAACATCA CCTTTCCCAG AATTGTGGAT AGGGTCTACA CAGGGAAATA ATAAGTGAAC 003760 003761 AAATGTGGGC TGAAAGCATA ATGGCTAATA ATATTTCCCA GAAGAGAAGA AAGAGGTGAG CTGTGTCTTT ACAGACATTG 003840 003841 CCAATAGGTA AGAGAGGGCA CAGAAACTCA AAGAAGCCTT AGATTTACTG AATGTAAGAG AAGGAAGAGG AGATGTTAGC 003920 003921 TTTTATCTTT TTTTCATAGC TTTTCCTGCA ACCTAGACAT TGTTTATATC ATTATCTTGG CTGTGTCACT AATTAGCAAT 004000 004001 TGATTTCTGA AAATTTAGCT CGTCATCAAT AAATGCTGTT CCTAAGTAGT CAATTAGAAT GAACATCTCC CAGGGATTTA 004080 004081 TGGGGTTATT AAGTCTGGAA GGTAGTCTTG GTGAAGGCAT ACATTAAGAC CTTGTATCCC AGGAGGATTA TCTGTGGTGA 004160 004161 CAGCAACAGG AGGTGAACCT GCTCAGCCCA GCTGTGGAGT TCAGCACCAG GCTGGTGAAT CCATCTTCCC AAGACCTCAT 004240 004241 GCTGTCACAG CCAGGAGACT TATGCTCTAA TTATGTGCCC CTTCTTTTGC AACCCCTACA GCTTAATGGG TTTCACATTC 004320 004321 TCTTAAGGTC TAATGTCCAT TTTTTTTTTT TCTTCTTTTC CTTTTAAAAA AAGATCCTAT ACTGACAACT CCAAATGCTG 004400 004401 GCAAGTTGAG GAGCAATAGG AACTGTCATT CATTGACTGG TGGGAATGTC AATGGTACAA CAATTTGGAA GACAGTATGG 004480 004481 CAGGTTATTA CTAAAGTGAG CATATTGTCA CTATAAATTC CAGTAAGTGT GCTCCTTGAC TTTGACCCAA ATTAGTTAAA 004560 004561 ATTTTATTTC CATAAAAAAT GTGGACATAG ATATTCATAG CAGCTTGATG GAAAGTTGTC AAAACTGGGA AGCAACTGAG 004640 004641 AAGCCCTTTA GTAGGCGTAG GAGTTATTAC ACTTTGGTAC ATACAAACAG TAGAATAAGA TTCAACACCA ATAAGAAATG 004720 004721 AGCTATTGTG CCACGAAAAG ACAAAGAGGA ATCTCAAATG CATATGACTA AGTGAAAGAA GCCAGTCTGA AAAGATGACT 004800 004801 TACCATATGA CATTCCAACC ATATGACATT CTGAAAAGCA AATATGGAGA GAAAAAGTGT GTAAAGAGCA ATGTTCTTTG 004880 004881 GAAAAACCAA TTAATTTTCA ACCATGAAAA AATGAAAACA GGTAAGTGCT AGAAGTAAAT GATGGATGAT TATTTTCATA 004960 004961 ATCTTAGGCA GAAAAAGTCT TTCTAAGAAG TTCTAAATTA AAACTTTGAT ATTTAAAAGA TTAAATATGT AATCCTTCAA 005040 005041 CATCAAAAAC ATAAAGATAA CAAAAATTAA AAGTAAATGA AGATCTGGGA AAATATACTT AGACCATATA TGATAATGAA 005120 005121 GTTAGCACTA TCATATATAA TGATATAATA AAGTCATATA TCGTAATGTC ATTGTTTCTA TAACATATAA AGAAATGTTA 005200 005201 TAAATCAAGG AAAAGATGAA CGCCTTAATA TAACGATAAG TTAAGAACAT GAAGCAATCT GAGAGACAAA TACAAAATGG 005280 005281 CAAACACAGG TTCAAGAAAA GTTTTACTTG GAGACAAATT TAGCATTCAT TACAATGGAT TGTCAACTGA AACTCATTGA 005360 005361 TTCAAATATG TTAAATATTT TAGATATATA CAACGTATCA AATCTTTTAG TATATTAATA TATAACAGAA ATATATATAT 005440 005441 TAAATGTGTA AGTTCATAAT GATATTTTGA AAAATGAAAA CCACACTAAT CATTTTTGGC TGTTGCTGGA CTCATTGCTC 005520 005521 TGAAATTGGA TAAATAAAGG TACAGAATAC AGCATTTACC TTGCCTCTCA TTTATGAACT GTGCTTCAGG TTAACCAAAT 005600 005601 AGATGTGAGG GAAAGTTCTT CTCCACAGAA GAATTCTAAT TAAAAAAGAA TGATTATTAG AAAAATAATT CGAAAAATGT 005680 005681 CATTTTGCAA CCCCTGCCGA GACAATGGAT TTTGGCAAGA ATCATAAATG GTAGTTGATG GGAAAATTGA TAATGGGTGA 005760 005761 ATGATGACAT CTAAACCCAT CAACTTCAGC ATCATGAAAA GTGGGACAAG TAGACATTGG GTGCCTGTTG ATTTAAACAC 005840 005841 TGCCCATAAA ATATTTTTGC CCCCTGAAAA AAATAAACCT AAATTTAATT GTGTTTCTTG ACTTAACTGC CAGTTAACAA 005920 005921 GAAATATGGG GTATATAAAC AATACCACAG GATACAATCA CATAAGACCA GGATGTGGGA AATTCAACTG GAAAAATGAC 006000 006001 ATATTTTAAA TGGCTTGAAA AAAAGGGGGA AGA |
Predicted Small Protein
Name | NONHSAT081644_smProtein_1685:1981 |
Length | 99 |
Molecular weight | 10980.7888 |
Aromaticity | 0.122448979592 |
Instability index | 50.6796938776 |
Isoelectric point | 7.73114013672 |
Runs | 13 |
Runs residual | 0.00638947167652 |
Runs probability | 0.0503104914871 |
Amino acid sequence | MIHQVTIPHVGSCTHSHLPGGKKINSFQKIIEAILFFPSELFLQCVITHALLWVFCLKSR LFYPPDHMCYELGEHTWLFSACHPAGPAKSATYAVSIA |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHH LLLLLLHHHHHLLLLLEEEELLLLLLLLLLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooo oooooooooooooooooooooooooooooooooooooo |