NONHSAT081816
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081816 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1663 nt |
Genomic location |
chr21+:35014790..35147140 |
Exon number |
13 |
Exons |
35014790..35015019,35091103..35091161,35093484..35093575,35094894..35094956,35107350..35107509,35122449..35122627,35124116..35124211,35127603..35127702,35134228..35134290,35138180..35138316,35140018..35140132,35144366..35144627,35147034..35147140 |
Genome context |
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Sequence |
000001 GGGAGGGAGC GAAGGAGGTA GAGAAGAGTG GAGGCGCCAG GGGAGGGAGC GTAGCTTGGT TGCTCCGTAG TACGGCGGCT 000080
000081 CGCGAGGAAG AATCCCGAGC GGGCTCCGGG ACGGACAGAG AGGCGGGCGG GGATGGTGTG CGGGGCTGCG GCTCCTGCGT 000160 000161 CCCTCCCAGC GGCGCGTGAG CGGCACTGAT TTGTCCCTGG GGCGGCAGCG CGGACCCGCC CGGAGATGAG CGTCGATTAG 000240 000241 CAAGGTAAAA GTAACAGAAC CATGGCTCAG TTTCCAACAC CTTTTGGTGC AGCCTGGATA TCTGGGCCAT AACTGTAGAG 000320 000321 GAAAGAGCGA AGCATGATCA GCAGTTCCAT AGTTTAAAGC CAATATCTGG ATTCATTACT GTGATCAAGC TAGAAACTTT 000400 000401 TTTTTTCAAT CTGGGTTACC TCAACCTGTT TTAGCACAGA TATGGCACTA GCTGACATGA ATAATGATGG AAGAATGGAT 000480 000481 CAAGTGGAGT TTTCCATAGC TATGAAACTT ATCAAACTGA AGCTACAAGG ATATCAGCTA CCCTCTGCAC TTCCCCCTGT 000560 000561 CATGAAACAG CAACCAGTTG CTATTTCTAG CGCACCAGCA TTTGTATGGG AGGTATCGCC AGCATGCCAC CGCTTACAGC 000640 000641 TGTTGCTCCA GTGCCAATGG GATCCATTCC AGTTGTTGGA ATGTCTCCAA CCCTAGTATC TTCTGTTCCC ACAGCAGCTG 000720 000721 TGCCCCCCCT GGCTAACGGG GCTCCCCCTG TTATACAACC TCTGCCTGCA TTTGCTCATC CTGAGCCACA TTGCCAAAGA 000800 000801 GTTCTTCCTT TAGTAGATCT GGTCCAGGGT CACAACTAAA CACTAAATTA CAAAAGGCAC AGTCATTTGA TGTGGCCAGG 000880 000881 TCCCACCAGT GGCAGAGTGG GCTGTTCCTC AGTCATCAAG ACTGAAATAC AGGCAATTAT TCAATAGTCA TGACAAAACT 000960 000961 ATGAGTGGAC ACTTAACAGT CCCCAAGCAA GAACTATTCT TATGCAGTCA AGTTTACCAC AGGCTCAGCT GGCTTCAATA 001040 001041 TGAATCTTTC TGACATTGAT CAAGATGGAA AACTTACAGC AGAGGAATTT ATCCTGGCAA TGCACCTCAT TGATGTAGCT 001120 001121 ATGTCTGGCC AACCACTGCC ACCTGTCCTG CCTCCAGAAT ACATTCCACC TTCTTTTAGA GAGTTCGATC TGGCAGTGGT 001200 001201 ATATCTGTCA TAAGCTCAAC ATCTGTAGAT CAGAGGCTAC CAGAGGAACC AGTTTTAGAA GATGAACAAC AACAATTAGA 001280 001281 AAAGAAATTA CCTGAACGTT TGAAGATAAG AAGCGGGAGA ACTTTGAACG TGGCAACCTG GAACTGGAGA AACGAAGGCA 001360 001361 AGCTCTCCTG GAACAGCAGC GCAAGGAGCA GGAGCGCCTG GCCCAGCTGG AGCGGGCGGA GCAGGAGAGG AAGGAGCGTG 001440 001441 AGCGCCAGGA GCAAGAGCGC AAAAGACAAC TGGAACTGGA GAAGCAACTG GAAAAGCAGC GGGAGCTAGA ACGGCAGAGA 001520 001521 GAGGAGGAGA GGAGGAAAGA AATTGAGAGG CGAGAGCTGC AAAACGGGAA CTTGAAAGGC AACGACAACT TGAGTGGGAA 001600 001601 CGGAATCGAA GGCAAGAACT ACTAAATCAA AGAAACAAAG AACAAGAGGA CATAGTTGTA CTG |
Predicted Small Protein
Name | NONHSAT081816_smProtein_605:838 |
Length | 78 |
Molecular weight | 7714.0811 |
Aromaticity | 0.012987012987 |
Instability index | 65.425974026 |
Isoelectric point | 6.20831298828 |
Runs | 13 |
Runs residual | 0.0327498588368 |
Runs probability | 0.0273939097469 |
Amino acid sequence | MGGIASMPPLTAVAPVPMGSIPVVGMSPTLVSSVPTAAVPPLANGAPPVIQPLPAFAHPE PHCQRVLPLVDLVQGHN |
Secondary structure | LLLEELLLLLEEEELLLLLLEEEELLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLEELLHHHHHLLLL |
PRMN | - |
PiMo | - |