NONHSAT081948
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081948 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1575 nt |
Genomic location |
chr21-:37504065..37528606 |
Exon number |
4 |
Exons |
37504065..37505372,37505985..37506059,37518554..37518653,37528515..37528606 |
Genome context |
|
Sequence |
000001 AGCCGCGGTG TGAGGGAGCG GGAGTCTTCC TTAGCTTCTC CGCCATGGGT GTCGCTTCGT AGCCGGGCTG CTCCGGGAAA 000080
000081 GGCCTCGTAC AGCACGCATT CACCAGAATC CTGTCAGCTT TCCTCTTCTC ATCCAGACGC CTGGCCAGGA TCCTCGATAA 000160 000161 GACCGTGACC CCCAACTTGG ACACCCCATA AGggtcttct ctgtcgccca ggctggagtg cagtgctgca gtcgtggctc 000240 000241 actgtagcgt cagtctcctg agctcagGAA AACTAGACAA TCCACCAGCC CAGGAGGGGA CAAGCAGGCT TATTCCTCCT 000320 000321 CCTCGTCATC TCTGGCTCCA GCCCCACCCT GGCCCTTGCT GGCATTCTTC CTCTTCACGT GGCTGGGGTT GGCCACCCCA 000400 000401 ATAGGGAAGC AGAGGGAGAA GTCAATGTGC TTCTGGGAAT CCAGGCGGAC AGTGAAGAAC AGGATATTTA CCACCTGCTC 000480 000481 ACGGACACGG ATATGACACT GTTGAATCAG CACATGAGCG TGGCGGATGG ACTTAGCCAA GCCAAGCTTG AAGACCTGGG 000560 000561 TCTGTAGGAA TCTCTAAGAA ATCATTGATC TTCAGGCCCA GGATGTAATC CAGCTTCATC TTGCCCTCAT CCAGCACCCC 000640 000641 AGTGCGGACC AGCCACTGCA GCAGGGCAAT GCCTTCGAAC AGACGCCGTG GGTCCTTCTC ATCAAGCGTC AGCAGCTCCC 000720 000721 GGGCGGCCTT ATGGATCTTG ACCAGGGTAA ATTTGACCCT CCAGACCTCA CATTTGTTCT GGAGCCCATA CTCACCAATC 000800 000801 AGCTTTAGCT TTTGGTCGAG ATGAGGTTTC TCGAAGGGTC TCTGCAGGGT CACATAAGTT TGGCAACAAA CCCAGCTCTG 000880 000881 GGCCGCTGGC ATGTTGGCTC CACTTGCCCG TCTATGCCTA AGCACAGGCC CTGGTCACTG AGAAAGAGCT CAAATTTTTT 000960 000961 ATATatttca tctaaggtgt tgattctatt gataccctta tccttttaac atgcccttat ccttttaatg ttggtaatga 001040 001041 tgctacctgt catttctgag actggtttgt gtctttcgtg tttttttctg atctgtctgg ctagaggttt accaattgat 001120 001121 ttgattttcc tcaaacttct ggttacaatg attctctctc tctctctttt cctgattata ttaatttctg ttctgatctt 001200 001201 tgtttccttt cttctgctta ctggatttta tttgctcttt ttctggtttc ttactgtaaa ggcagaagtc attgatttgc 001280 001281 attgatttga gacttctttt ctaatgtagg cagtaagtgg tgtaaattcc cttttagtat gactttagtg gcatctcaca 001360 001361 ttgatatgtt ttcaatttca ttcagtttaT Ttttatttat tttttaaatt atttatttat ttatttattt TGAGTTGTGT 001440 001441 AGCCCTTTAT TAGCAACTAA AATAGAAGGT ATCTGTTGTA CAACATGGGT AGTAATTGAC TATAACTGGA GATTTATTAT 001520 001521 ATTCTAATAC AGATCATTTA TAAATGCAAT TTCTTTATTA AAAAGCTTCC ACCTT |
Predicted Small Protein
Name | NONHSAT081948_smProtein_668:823 |
Length | 52 |
Molecular weight | 5893.6091 |
Aromaticity | 0.156862745098 |
Instability index | 97.6960784314 |
Isoelectric point | 12.3026733398 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0433795139678 |
Amino acid sequence | MPSNRRRGSFSSSVSSSRAALWILTRVNLTLQTSHLFWSPYSPISFSFWSR |
Secondary structure | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLLEEEELLLLLLEEEEEEL |
PRMN | - |
PiMo | - |