NONHSAT082993
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT082993 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2077 nt |
Genomic location |
chr21+:47207916..47213897 |
Exon number |
3 |
Exons |
47207916..47208291,47209390..47209585,47212393..47213897 |
Genome context |
|
Sequence |
000001 GGAAGATGGG GGCACCTACA GTTGCAAGGT GGGCACCAGT TGTCAGGAGT TGACAGGAGG GCATAGCCAG GAACAGCTGG 000080
000081 TGTCTCCTTA CTGGGACATG CTGTGACCTG TAGAATCGTG TCTGACCATT TCTGGAGGAT GCAGTACTGA ATTCAAGTAA 000160 000161 CAAGGTGTCC TGTGAACCCC CCACAGTCAG ATGGGTGAGG GATGGGGAGG GTCACGCAGG GTGTGGGCGG CGTGCCTGGC 000240 000241 ATGGGTCCTG CCAAGTTCGT CAGGTAACGT GATACTTCTC CCTTGCTTTT TGGTAGATGG ACAGTGTGTC ACCCTCGGGG 000320 000321 AGCAGGTGGG CTGGCAGGAC AGGCGGCCCC AGGCCGGGAG AAGGAGACAC TCCCAGtgtt caatagggcc gtcaaggttg 000400 000401 gccttattaa gaaggtgatg ttaaaggaaa gatgagggtg tgagccatgg atgaggagca atccgggcag aggagtcccc 000480 000481 agcacgaagg ctttaaggtg gaggacaacc cggggccagt gtggccggag cagagcgagc aagggagagc atcaggggct 000560 000561 gagttccagg agACAGCACA AGTCAGTCTT CTGGTGATTG TAACAGGATG GTCACCTGAG AACAGTCATC TACTGACACC 000640 000641 CTGAACCAGA ATCTCCAGAA AAGACAGAAA TTTTGAAACA GCAGCAACAA CAGAAATTCA TGATGTGCTA GGAGACAGGG 000720 000721 ATGACTGCAG TCAGAGGACC AGATGTCTTG ATTGATTATT AAGAGAGAGA AACAGGCGAT GTTTGTGGAA TCACATCACC 000800 000801 ACAGAAGACA TGCAGACAGG CCTAATGCAG AGAAGAGTGG AAGTTAGGAC GCTCAGCGCA GATTAATGGA CTCAGGGAGT 000880 000881 TGGAGAGGGC TGGCTGGCAG CACTTACTCA GAGGAGCAGA GCCAGGTATC CCCCTCAAAC CCCCCGGCTT TGGGCCCAGG 000960 000961 CAGTCAGAAG TTGTGTCGGG GCCAGCCACC AACTCCAGTG AGGGACAGGG AGCCACTTCC AGGAGATGAA ACATTGTCAC 001040 001041 ATGCAGTCCA AAGACACCCC TCCTTCTCCC TGCTGCAACA CCCGAGGCTG ACCAAAGTAG ACAGGAACAG TATCCAGGAT 001120 001121 GAGCAAACCA AGCCTCTCTA AAGCAAAACT GCCAACAAGC TGGGAACCAC AGCACGCTGG AGGGAAACCA GCAGCAGGAG 001200 001201 AAAGCAGCAG CAAGCACAGC AGAAAGAAGA CGTGGGGCCG CCTTCCGGAC GGAGACTCGG TCAGACACAC GGCTCCTTCA 001280 001281 AAGGGAGTGC CAAAGGCCTT GAAGAGTAGA CGGTCAAAGT GGCACAGCCA GGAAAGCAGG ACTCACAGAA TGGGCAGCAT 001360 001361 GAAGAGTTGC ATAGCCACGG ACTATTGAGA ACGCAGACCC AGAACTGTTA CCGCACTCAG ACGTCAAAAA CCGAGAGCTA 001440 001441 TTCCCGAGCA CAGACCGAGG ACCAGCGAGT CCAGGACTCG CTGATGCAGA GCTCCAGGAC TGACAGGCGG GGAGAGCGAG 001520 001521 AGGAAAAGCT GAGGCCAAGC GCGATGCTGA GAAGCTCCAT ATTCTGTTTA ACAGGAGTCT GAGGACCAGG AAAGAGAGAA 001600 001601 TATTGAGGGG AAGATAATGG AGACATCCTA GAAGATCGTC TCCCCGAGCA CAGAGCGCAT CACAGGACTG ACCAGTATTG 001680 001681 AGTGGGCGCG GGGAAAACAT GGCTGCCAGG ACCTGTGAGG ACCGAGTTTC AGATACTGTG GACAGCGGAG ACTCCACAGG 001760 001761 GGCTCTGCAG GAGGAGACGG GAGGCGATAG CCCCTGCAAA GCTCTGGCTG GTgattggca tcagacttct caatgagaaa 001840 001841 ctgtactcta gatttaatta gaacagtatc ttcaaaatac tcgggaaaaa tgatttcaaa cctggaattg tagacacaga 001920 001921 cagactagaa ttcaaattga agggcaaagg aaaagtgtct tcagatagtg aaggactcag aGGTTACCAG CCTCATCCCT 002000 002001 AATACCCTGA CAAAACTAAA AAAAAGACAA CTATCTATGA AAGAAAACAA GTTTTGATTC CACAAATAAT GGAGAGG |
Predicted Small Protein
Name | NONHSAT082993_smProtein_1118:1387 |
Length | 90 |
Molecular weight | 9781.9928 |
Aromaticity | 0.0449438202247 |
Instability index | 66.2831460674 |
Isoelectric point | 10.6696166992 |
Runs | 9 |
Runs residual | 0.0420797532496 |
Runs probability | 0.0321694243263 |
Amino acid sequence | MSKPSLSKAKLPTSWEPQHAGGKPAAGESSSKHSRKKTWGRLPDGDSVRHTAPSKGVPKA LKSRRSKWHSQESRTHRMGSMKSCIATDY |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLHH HHLLLLLLLLLLLLLEEELLLLEEEEELL |
PRMN | - |
PiMo | - |