NONHSAT083009
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083009 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1682 nt |
Genomic location |
chr21+:47456966..47459721 |
Exon number |
2 |
Exons |
47456966..47457812,47458371..47459721 |
Genome context |
|
Sequence |
000001 GGAAAGGCCT CACACATTCT GCCCCGGCTG ACGCCTTCCT TGGGCCAGTG CTCGGGGGTG TGTAACAAAC GCCAAGACGC 000080
000081 ATTGTAAAGA AGGAAGCCTG CGTTTCCATC ACCGGCTTAA TATCAAACAA AAGTGCAATT TTGAAAATGT AGTCCAAGGT 000160 000161 TTTCTGTGGT GCGGAAATGG CCAGGCCAGA CCTCCGTGGG TGGTCCTTCG TGTCCACGTC AGCGCCCTAC ATCCACACTG 000240 000241 TGGGCACCAT GACCTCACAT GCGGAGCGGA GCAGGGCCGG CGCCCGGAGA GCCAGGCTGG TCACGAACGA GGCCTAGAGG 000320 000321 GCGTCAGGCC CCAAAGCACT CACAGGCTTC TCCTCTGTCC TCGGGGCCTT CAGACACCTG CATGCGCCGA TTCAGCCACC 000400 000401 CGCGCGCGCC GATTCCCCTG GCCATGGGGT TTCCAAAGTG TGTGCTCAGA GGACAGTTTC CTCCAGGATG ACCTGTCAGT 000480 000481 GGCTCTCTGT GCCGGGGACG TCGCGTGCTG GGTCCCGGTC TGAATGCTTC CTAACGATTT ACCCAGTTCC TTTTCTCCAC 000560 000561 TCAGGAGGCG TTTGCTGAGA GGCACAGGCT GAGCCCCCGT GCTGATGCCA CGACCGAGGG AACGGGTCTC CCTGTCGGCG 000640 000641 TGAACTGACC CGGCCAGGCG TCCACTGCCA CTCGGACTGT CTCCCAGGCA CGTGGCGCCC ACACGGGCAG AACACGCCCT 000720 000721 CCACACACGC GGCTTCGGGC AGAACACGAG GCGCCCTCCA CACACGCGGC TTCGGGGCTT GTCATGAAAA AAGCTGAATG 000800 000801 CTGGGGGTGC AGCTTTCACC AACAGAATCC CGTTTGGAAG GGACGCGCCT GCAGGCCTGC AGAAGCTGCA TCTCGGGATG 000880 000881 GCCAAGAGCC CGGCCAGGCC CCACGGCTGC ACCCAGGACG GGATTCATGC CCCATGCCTG GCTTCTCACG ACCACAGAGT 000960 000961 GCCTTTCCCG GGACTGGATG GAGGCAGAGT GAGAGAAGAG CCTGGAGCAA GTGTTTTGGA CCACAGTGAT CAAACACGGA 001040 001041 GCCCGTGGGA GGACGTGGGA GGACGTGCGG GGCTTTGCCG GGCGAGCCCG ATGCTGCTCA CGGCACCTGG AGTGTTCGGG 001120 001121 CCGCTATTTG GGCGGTGTTC TGAGCAGCCG TCAGACCTTG AGTTTTGCTG TCAAAAGCTC TTCTCTCCTG CCCCGAAATA 001200 001201 TACCCAGTCC ATGCCCCAAG AGGAAAGGCC TTTGTGCCAG GTGGGCACCC GGCTGCCTCT TGGCAAAGAC TTGTTGGAAA 001280 001281 AATGAGTGAG TGACGAGGCT GCTGGTCAGC GTGTGGCCTG TGGCGTCACT GGGGCCTCTG GCGGCTGCTG GAACCAGAAG 001360 001361 AGGAGCCTGC GCTGCAACCC AGGCCGCACC ACATCAGGGT CTCACTGGGA GCCGGAGAGC TTGTTCCCAG GCAACCCTGA 001440 001441 AACAGAGAAG TGTCCTTGGA GGCTTCACCC ACGCAGACCC ACGGCTTCCT GGTAGAAGCC GTCTGCACCC CCGCACTGAC 001520 001521 CTGGCTCTGT GAGGAGAGCG GGGAGGGGCT CCAGGGAAAC ATCCTGGCGT TGGCGTAGCC AGCCTGTGAG TCACGGGGAA 001600 001601 GCCGGCTGCC CGGATGCCCC CCAAGGACCC GGTGAGTCCA CACACAGTAC AGCAGGGCCT GGGCCCGCAC CACCGCCTTT 001680 001681 TC |
Predicted Small Protein
Name | NONHSAT083009_smProtein_797:991 |
Length | 65 |
Molecular weight | 7116.1112 |
Aromaticity | 0.0625 |
Instability index | 80.98125 |
Isoelectric point | 7.76629638672 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0344952795934 |
Amino acid sequence | MLGVQLSPTESRLEGTRLQACRSCISGWPRARPGPTAAPRTGFMPHAWLLTTTECLSRDW MEAE |
Secondary structure | LLLEEELLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLL EELL |
PRMN | - |
PiMo | - |