NONHSAT083045
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083045 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1967 nt |
Genomic location |
chr21+:47649438..47655367 |
Exon number |
2 |
Exons |
47649438..47650441,47654425..47655367 |
Genome context |
|
Sequence |
000001 AGCGGGCTGG CGTCCCTGGG AAGCTGAGCG CCGCGTAGCT TCGCCGGGGG GAGTGGGGTA GGCGCGGTGA GGCCGTGGGC 000080
000081 CCCCACACCT GGCGGACCAC AGGGGCCAGA AGCCCTGGAG CCCCGCCAGG GAAGGGCTGC GTCGCTGGCC AGGACCGAGC 000160 000161 GCGGTAGAGC CTCAGCTGCT CACGGGGTCG CTGGAGTTGG GGGTGGCCCC AGGAGAAATT AAAGGTGAAA AGCCTTAGCA 000240 000241 GCAGAGGGAA GAGGAAGATG GAGGCAGAGC GAGTGACCGA ACTTGGAAGG GACAGCCGGG CGCAACAGGG CAGGGGGGCG 000320 000321 TCTGACTGTT GGAAACATGG CTGACGTCTG GAGGCTGCAG CCAGTGGTCC GTAAGTCAGG TCAAGGACCC ACAGAAGACC 000400 000401 CCAGCATGTC TTCACCTGGC CCACAGAAGC CCTGACATCC AGTTACAACT GCCCCAGCCT AGTGAGCATT TCGGCACCCA 000480 000481 CTCCTCAATT CCTACCCCCA GCCTAACTTC GAAGGGGCGG TGAGCCACAG CAAGCCGGAG GAGAAAGTTG GAAGAGAGAG 000560 000561 TGGACAAAAG AATACCCACA GGCACCTTCC CCACAGTGGA ATAGCGGGGT TTTAGACAAT CAAGGATAAT CACCTCTTCC 000640 000641 TATCCCAGTT CAGAAACGGA TGAAAAAGAC ACAGCAATAA GATGGGTGGG TATCAAAATA TCAGCTTTGC CACAAATTAA 000720 000721 AAACCTAGCT TGAAGGACAA GGCTTAAATC TGCGAGCAAG AGGGCAAGCT ACTAAATCAC CCGTAAGTCA GACAAACATA 000800 000801 TCCCCCAGCC TCTAGGCCAT GAAACTGCCT CACCAAGCAC TATGCAATTG AGTGCCCACC AGAAGACACC CCTCCAGTCA 000880 000881 ACCCACAGAC CCCAGAAAGA GTACCCAGAG GAGCCTGAGC ACACTCCACT CTATCTGTTC TCTGAAATTC AATCAAATGA 000960 000961 GTCACTCTAC TTCTCTGGAA GCAGAAAGAG GCTGGAAGTT TTTCTCCAGC ACCCACCTCT CAAGATTCCT GCCCTACATG 001040 001041 CCATTCTTAA AAGAAAATGT GACCAGATCA CTTCTCTGCC TAATCTTCAA CAACGGGTTC TCACAGCTCT CAGAAGAAGG 001120 001121 TGACAAGAAT CTCTGACCTC ACCCTGCTGG CCTGTTCCCC TCACCTGGCC ACACAACCAA GCTGGTACCT CCACGCTTTC 001200 001201 ATCATGTCCT CTCAAGTACA CTGTCTCCAG CTACACCCCT GCACTCCTCT CCGGGAATTC TGTTTCTCCT CTACCCAACC 001280 001281 AGACCCTGTT CCATCCTCTG TTTTTTCCTT GCTACCAATT CAGGCCCACG CCTCATGCAC ATTCTCTGAG AATTATGTAC 001360 001361 ATAAGTACCT GACTCTCCTG GATGTAAGCT GGGTGGGCTT AGCAGGCAGA GGCCCTGTGT CTTACTTTAT CTCTGCATCA 001440 001441 CTGATGTCTG GCACATCAAG GACTGCAAGT TTGCTGAGAG AATGAATCGC CTTTTATACA TGGAAATGTA AGCTCTAAAC 001520 001521 TGCCTCAGAG CATATGCTGG TGGGTGACAA TCTGAGGAGG TCATGAATAT AGGAGAATAT TGAAGAGGTC ACACAGGGGA 001600 001601 AACAACTTTT CCTTATGAAA AACTGGGAGA CTGACATTTA AATGGTTTAT CTGCATGATT AAATTAATCA CATTTCCAAC 001680 001681 AGTGCATCAA GCATCTGAGA ATAACATTAT TTTGAGTAAA AACAGAAACT CTTCGGGAGA GACCCCCTCC CCACAGGTCA 001760 001761 GGCTGCTCAA ATGTCCACCA TGTCTAGCAG CGCAGAGAGA TGGAGCTCAG AGGCAACTTC CTCTTCCCTT GAACTCCGGA 001840 001841 TCAGCCTTTC CAGGTGCTTT AGTCGTTCGC CTAGACACGT TCCTGTCGCC TCTGACAGCT GCAGTTGCTC CCTCATCATG 001920 001921 TCACTCTATT TGAATAAAAA AGAAACTGAA CAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT083045_smProtein_956:1135 |
Length | 60 |
Molecular weight | 6842.7023 |
Aromaticity | 0.135593220339 |
Instability index | 61.7847457627 |
Isoelectric point | 6.70831298828 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.0432589452198 |
Amino acid sequence | MSHSTSLEAERGWKFFSSTHLSRFLPYMPFLKENVTRSLLCLIFNNGFSQLSEEGDKNL |
Secondary structure | LLLLLLHHHHLLLEEEELLHHHHHLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |