NONHSAT083156
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083156 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5492 nt |
Genomic location |
chr22+:17338027..17362141 |
Exon number |
5 |
Exons |
17338027..17338171,17355270..17355413,17355604..17355708,17356930..17356978,17357093..17362141 |
Genome context |
|
Sequence |
000001 ACCCACAATT ACTTCCAATT TATGTAGTGA ATTTTAAAAA TTAAAAACAC TAAAAAAGGC ATTATTTTAG CCTGTAATTA 000080
000081 GTTAAGCCAT TCAAATTTGA AACATACAAA ATGATTTATT TGAATTCAGG AACTGCCCCT GTTCCTTATA TCATTGCTTT 000160 000161 GTTTTTTAAA TTTTAGTTTG ACTCAATTTT ACAGTTTCAG GATTTTGTTT CTGTTTCACG TTTTAAGCTT TTCTTTTATA 000240 000241 AATAGTTACT TTCCTAGTCT GAAATCTATA CATTGTTTCA GTAATGAATC AGCACTTTGG GAGGCAGAAG TGGGAATATC 000320 000321 ACTTGAAGCC AGGAGTTGGA GACCAGCTTG TTCAATAAAG GAAGACCTCA TCTCTAACAA CAACCACAGC AGCATGCATT 000400 000401 GTGATTATTT CGAAGACAAA ACATTTTTGG CATTGTGAGA TATACTTATC CCTAATATAG GGACTCGATT AGTTTCTGCT 000480 000481 AGTGTGGAGA CAAGTCATAT CATGGCTAGG GGTCATGATG GTAGGAGCAG TCAGAGGATT TCTTGCATTG TGATGAGTGC 000560 000561 ATATAAGTTA AATGAGCCAC TTATCAGTAG ATTTGATAGC AGGATAACAG TTATATCACT GATACCTAGG CAGTACATGA 000640 000641 CACTCGGTAA AGAATAGATT AATCCTCATG CTCTTCATCT TCCTCCTAAT CTCTTTACCT GTGCTGCCCT CCAGCTTTCA 000720 000721 AAGTGCTCTG AGTCACCACT TACACTGTGT TCCTTAGCTG CCCCTTCAGT GGGCCAGTGT TTCTGTGCCC CAGTGTTCCT 000800 000801 GAGAGTTAGA ACACAGAAAA CAGAGCAAGC TCTTGTCCAC ATCACAGAAC ATCTTTGTCT CCCTGTGGAT CCCACACATT 000880 000881 TGTTCATTAG AGCTCAGGAA TTGCCAGAGA CTGGCTTTTC TGGCAATGGA CACTAGATTC TTCAGAGGAA TATTGGTTGA 000960 000961 AATCTTCCTG CTGTGACAGT TCCCTGCATG CAGGGCAGGA ATATGTGCTT CTTCCCAGCA AAGGCAGAGG CAGGGCCTAC 001040 001041 AGAAACTGTG CCCGCAGCCT ATAGTGATGG GGTCTATGAG GTAATTCAGG CAGATGAGGC AGGCGAGTTC TTTCTGGAAG 001120 001121 GCTTGTGGGA AGTCTAAGTC CATTTTTCTG AGGGAAGGAA ATCAGAAGAA TTTATTCTTA TGCCATAGAG AGACAAAGAT 001200 001201 CTACGCAAAG TTTGAATCAG GTTTTGAGTA GGATCTGCTC ACAGGTTTAA ATCTATAGCA GGATATGATT TTATTTTGCA 001280 001281 CATAACAAAA ATGAAAAACT GAGGCACAGA ATTCAAGCTT TGCAGAAAAA TGTGTTGGCT CCCTAACCAA CACACACACA 001360 001361 CATCTACTTT CCCAAATTCT TTCCTCCTGT ATGAAAAAAA CTTAAGGCTG GGCTCAGTGG CTCATGCTTG TAATCCAGCA 001440 001441 CTTTGGGAGG CTGAGGCAGC AGGATTGCTT GATCCAAGGA GTCCAAGACC AGCCTGGGCA AGATGATGAG ACCCTGTCTC 001520 001521 TACAAAAAGA AAAGGAGGAA AAAATTAGCT GAGCATGCCA ATAGTCCCAG CTACTAGGGA GGCTGAGGTG AGAGGATTGC 001600 001601 TTGAGCCCAG AAGGTCAAGG CGGCAGTGAG CCATAATCCA GCCACTACAC TCTAGCCTGA ATGACAGAGC AAGACTCTGT 001680 001681 CTCAAAAATG AACAAAGAAA GAAAAGAAAG AAAGAGAGAG AGAGAGAGGG AGGGAAGGAG GAAGGAAGGA AGGAAGGAAG 001760 001761 GAAGGAAGGA AGGAAGGAAG AAAAGGAAGG AAGGAAGTTT ACAGAGTTTT TTGAGGTGTT AGTGTTCCCT AAATTGTATG 001840 001841 GTCTTCAGAG GTTTACCCTC CTATAGCTTC AAGGGGTGAG TCCTGACTGG TAGGAAAATC AATCACACTC TTACTTGCCA 001920 001921 GTGATTCATT TAGGGAAGAC AGCTAACTAA GCTCTTCCAC TTTGATTATT TCATTTAATT GTAACAACCA TCTTATCATG 002000 002001 ACTTCTTCAA AATTACCCTG CCAGTAAGTG TTGGAGGACT CCCCAGAAGC AGAAACCACC ATGCTTCCTG TATAGCCTAC 002080 002081 GGAACCGTGA GCCAACTAAA GGTGTTTCTC AGGTATTTCT TTATATCTTT GGCCAAAATT AAAGAGTTAG GCTTTACTCT 002160 002161 CCAAGATACT GCAACAGATA AAAACGAGCC ACCACTGTTT TCTAATGTTG TTTTCTTGTT AATTCAATCA ACAAGTATTT 002240 002241 TCTGGTAAGT TTAGTGTTCC AGAGACTGTT AACCTGGTGA TGCACCGGTT AATGAAACAT CCTTAAGAGA AATAAAAGTT 002320 002321 GAAAAATAAG CCAGATGATA AAATGCAGTA GTGTACACAA TGCCACTTAT CCGCATGTCT TCTGTCTGTC ACCCATGATC 002400 002401 CGGAAAATGT CTTTAGTATA AGCCATTGAT AAAGATGCCT GAAAAATGTA TGTATAGAAG ACATAGTCAC AAAATTACTT 002480 002481 TTTTCCTTTG ATATCCCTTG TTACCTCAAA CAGAATTTAC CACTCCAATT CGATTTCTGA ATACATGGGA GTTAATAGAA 002560 002561 TACTCCTAAT CCATTTATAG GATCTGCACT AAGTACAAAA ATTAAAGACA TCTGAAAACT ATTTGGTGAG TCCTTATAAT 002640 002641 CCATATCAAT AATTATGGAA TATATTAAGT AATAGACCAA AAATTAATCA TCATATTAAC CAAAAACACA TAGCAAGACA 002720 002721 AGATAACTAA ATATTTTCAT TTGGAAATTG GGAAATTTAG TCAATTTTAA AACTCAGCAA ATGAGATCAT TTCACAGAAG 002800 002801 CAACCTAGGT TTGCTGGTAA ATTAAAATTA TGACATTTTG TTTTGGTTTG GGAGGGTAGT TCCTCTTCTG TAAATTGTGT 002880 002881 ACTCACATAA GAAATATATC TATGTTCTCA CGGACACTTA CTGTAGAGGT AATAATATGA AGTTAGCTCA GGGATCAGGG 002960 002961 CCTCACAGTG CAGTGCTGGT AGCTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTGCCCT GCACCTTGAG TAAAAGTTTC 003040 003041 CTGAGGCCTC CCCGGAAGCA GAAACCACCA TGCTTCCTGT ATAGCCTATG GAACCGTGAG CCAACTAAAG GTACTTCTCA 003120 003121 TGTATTTCTT TATAGCAATG CAAGAACATA CTAATACAGC TAAGCAGAGG CCATCAGGAC CAGCAACAGT CTGAGCTGGA 003200 003201 TGAGAGACAA AGCTAAACTT TGAGCAGCAG CAGGAGCTGC CAGGGAGACA GAAAGGAAGG ACAGACTCCT AAATTCCAGG 003280 003281 ATGTCTCCTT TAAGTCTGTA AGAAGCTCAG CCACCGTCTC CTTACCTGAC TCCTTTGGGA AAGAGTTTCC CTAGGTTAAG 003360 003361 CCATACAGGG ATAGGGTAGG AGATGCCATT TGGATCTAGG AGCAGAGGGC AGAGACTCAG CAGGAAGAGT GTCTCTTTGA 003440 003441 GAAGGAGACA CAGTGGAACA GCTGTGTAGG TTCACAGGGC CAGCTGTGGG TAGAGTTGAG TGTACATTTT TAGAAGCCAC 003520 003521 AATTCCCAAA AATCTCCTGA CTATAACATC AGTGCACGGA GCCAGTCAAA TGGAGGAGGA GTGGGTCCAG GCAATTCAGG 003600 003601 AAGAAGGAAA GTAACAAATG AGTGGTTGCA GGAGGACACC CTTTCTGTCG AGGTCACTAA ACAAAACATT GTCTCCTCCC 003680 003681 CTTAACTTCG GAAACAAGCA ATGGAGGGTA AAAGTGTTGC CTGGGCCCTG GGGGCAAAGG CAGTAGATAA CTTCTCTGTC 003760 003761 GTGTTCTCCA GAAGGGCCCA TTCCAGCCTC ACAGGCCGAG AAGTCTGTTC GGTTCCCAAG TACTAGAGAT GCTGCTATAA 003840 003841 GGGACTCCCG AATTTCCTTC CTGAACCAGA GGCTGCCCAG CCTTTTCTTC CTGTTTTATT TTTTCCCAGG AAGAAACTTG 003920 003921 CCTGTACAAT TACAAGGTTC TACGGTTCTA AATTCCATTC TAGTCTTCCA CATCATTTTG AAGGTATAAT ATTATTTGTC 004000 004001 AAAGTGGGAT GATAGAAGAT ATGTGTGGAC TTAAAATTAA ATTGTTGACA AGGAAAAAAA CTAAAATAAG AAAATAAGAG 004080 004081 AGAAAAAATA TATGCATGTA CAGTGGTTAG CTAGAAATAT GCCTTTTAAA TATTTGGCAT GTGGTATGTG GGCCTCAATG 004160 004161 TGTACTATTG CACTAGCTTC CCAAATATTA AAGGATGTCT TTTAAAAGAA AAACCTCTTG CTAAAAGGTT AACAGTTAAA 004240 004241 ATAACCAGAG TGGCACAGGT ACCAGTCATT AAGTGAAACC TTTCATCTTC CCAGAATAGT ACCTGTTCCC AAGCCAGCTT 004320 004321 CTTTGAAAAT CACTTTTCTC TCCTTTACTA TTTAGTTTAC AGATTGTATA GTAACAATAT AGAAACCACA ATAGTAGCAA 004400 004401 AAAAAATAAA GAATATTTTT AAATGAAAAC TCACATCCTA ACTCTAACAA AACATGAAAA TTAAACCTGA ATGCCTCCCA 004480 004481 TTCCTGATAT ATTTTTCACC TAAATATTCA GCTCTGGGAT TGCATTGTTT TTGGATTGAG TGGAAATTAT TGCCTGGTCT 004560 004561 TGAAATCTTC CACAATGTGT GTGTGTGTGC GTGTGTGCAT GTGTGCGTGT GTGTGTATGT GTGTATGTGT GGTGAATATA 004640 004641 TTTCTTTTTG TTCAGAGGAA ACATTTTTTC AATATGTATA TTTATTTTAG GCAGATTATG CTAGTAATTT TCTACAAATG 004720 004721 TGCTTTTTAA AAAATAACCT TTAATTTAAA AAAAATTATT CTTTCTCAGT GGCCCACAAT TGTTAAAAAT GCTACTAATG 004800 004801 GAGCTGGGTA TGGTGACACA CATCTGTCAT CCCAGCTACT TGGGAGACTG AGGCAGGGAT ATTGCTTAAA CTTGGGAATG 004880 004881 TGAAACCAGC CTGGGCAACA TAGTGAGATC CCAATCTCAA AACTCAATCA TTAAAAAATA AAATAAAATA AAACACTACT 004960 004961 AATAGCTTTT TAAAAAATAG TTCTTAACCA ATTTTCCTAG CACCTTCCTT TCCTCAGTGA AGTATAGAAA TATGTGGTCA 005040 005041 GGCACTGTGG CTCACACCTA TAATCCCAAT AATTTGGGAA GCCAAGGCAT GAGGATCAGT TCATTCCAGG AGTTCAAGAC 005120 005121 TAGCCAGGGT GACATAATGA GACTTGGTCT CTAACAAAAA TTTTTTTTTC TTTAATTACC AGGGCATGAT GGTGCATGCT 005200 005201 TGTAGCCCAG CTACTTGGAG GCTGAGGTAG GAGAATCACT TGAGCCCAGG AGGTCAAGGC TGCAGTGAGC CATGGTTGCA 005280 005281 CCACTGCACT CCATACCTGG GTGACAGAGT GAGACACAGT ATCAAAAACA AACAAACAAC AACAAAAAGT ATTTGTTTTA 005360 005361 GAAAAAACAT TTGGTGAGGT TTGGGCTTAA AAATATATTA TTCTAAAATA TTCATAAATA TTCTCTAGTA ATGATAAGAT 005440 005441 TAAAGTGACA AAGACAAACT TTTTTCCTGT GCAGGTCCAT CTCTCGCCTT CC |
Predicted Small Protein
Name | NONHSAT083156_smProtein_4574:4729 |
Length | 52 |
Molecular weight | 6181.8026 |
Aromaticity | 0.196078431373 |
Instability index | 45.2060784314 |
Isoelectric point | 8.84173583984 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0190400484518 |
Amino acid sequence | MCVCVRVCMCACVCMCVCVVNIFLFVQRKHFFNMYIYFRQIMLVIFYKCAF |
Secondary structure | LEEEEEEEELLEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEELLLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTToo |