NONHSAT083156

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT083156

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5492 nt

Genomic location

chr22+:17338027..17362141

Exon number

5

Exons

17338027..17338171,17355270..17355413,17355604..17355708,17356930..17356978,17357093..17362141

Genome context

Sequence
000001 ACCCACAATT ACTTCCAATT TATGTAGTGA ATTTTAAAAA TTAAAAACAC TAAAAAAGGC ATTATTTTAG CCTGTAATTA 000080
000081 GTTAAGCCAT TCAAATTTGA AACATACAAA ATGATTTATT TGAATTCAGG AACTGCCCCT GTTCCTTATA TCATTGCTTT 000160
000161 GTTTTTTAAA TTTTAGTTTG ACTCAATTTT ACAGTTTCAG GATTTTGTTT CTGTTTCACG TTTTAAGCTT TTCTTTTATA 000240
000241 AATAGTTACT TTCCTAGTCT GAAATCTATA CATTGTTTCA GTAATGAATC AGCACTTTGG GAGGCAGAAG TGGGAATATC 000320
000321 ACTTGAAGCC AGGAGTTGGA GACCAGCTTG TTCAATAAAG GAAGACCTCA TCTCTAACAA CAACCACAGC AGCATGCATT 000400
000401 GTGATTATTT CGAAGACAAA ACATTTTTGG CATTGTGAGA TATACTTATC CCTAATATAG GGACTCGATT AGTTTCTGCT 000480
000481 AGTGTGGAGA CAAGTCATAT CATGGCTAGG GGTCATGATG GTAGGAGCAG TCAGAGGATT TCTTGCATTG TGATGAGTGC 000560
000561 ATATAAGTTA AATGAGCCAC TTATCAGTAG ATTTGATAGC AGGATAACAG TTATATCACT GATACCTAGG CAGTACATGA 000640
000641 CACTCGGTAA AGAATAGATT AATCCTCATG CTCTTCATCT TCCTCCTAAT CTCTTTACCT GTGCTGCCCT CCAGCTTTCA 000720
000721 AAGTGCTCTG AGTCACCACT TACACTGTGT TCCTTAGCTG CCCCTTCAGT GGGCCAGTGT TTCTGTGCCC CAGTGTTCCT 000800
000801 GAGAGTTAGA ACACAGAAAA CAGAGCAAGC TCTTGTCCAC ATCACAGAAC ATCTTTGTCT CCCTGTGGAT CCCACACATT 000880
000881 TGTTCATTAG AGCTCAGGAA TTGCCAGAGA CTGGCTTTTC TGGCAATGGA CACTAGATTC TTCAGAGGAA TATTGGTTGA 000960
000961 AATCTTCCTG CTGTGACAGT TCCCTGCATG CAGGGCAGGA ATATGTGCTT CTTCCCAGCA AAGGCAGAGG CAGGGCCTAC 001040
001041 AGAAACTGTG CCCGCAGCCT ATAGTGATGG GGTCTATGAG GTAATTCAGG CAGATGAGGC AGGCGAGTTC TTTCTGGAAG 001120
001121 GCTTGTGGGA AGTCTAAGTC CATTTTTCTG AGGGAAGGAA ATCAGAAGAA TTTATTCTTA TGCCATAGAG AGACAAAGAT 001200
001201 CTACGCAAAG TTTGAATCAG GTTTTGAGTA GGATCTGCTC ACAGGTTTAA ATCTATAGCA GGATATGATT TTATTTTGCA 001280
001281 CATAACAAAA ATGAAAAACT GAGGCACAGA ATTCAAGCTT TGCAGAAAAA TGTGTTGGCT CCCTAACCAA CACACACACA 001360
001361 CATCTACTTT CCCAAATTCT TTCCTCCTGT ATGAAAAAAA CTTAAGGCTG GGCTCAGTGG CTCATGCTTG TAATCCAGCA 001440
001441 CTTTGGGAGG CTGAGGCAGC AGGATTGCTT GATCCAAGGA GTCCAAGACC AGCCTGGGCA AGATGATGAG ACCCTGTCTC 001520
001521 TACAAAAAGA AAAGGAGGAA AAAATTAGCT GAGCATGCCA ATAGTCCCAG CTACTAGGGA GGCTGAGGTG AGAGGATTGC 001600
001601 TTGAGCCCAG AAGGTCAAGG CGGCAGTGAG CCATAATCCA GCCACTACAC TCTAGCCTGA ATGACAGAGC AAGACTCTGT 001680
001681 CTCAAAAATG AACAAAGAAA GAAAAGAAAG AAAGAGAGAG AGAGAGAGGG AGGGAAGGAG GAAGGAAGGA AGGAAGGAAG 001760
001761 GAAGGAAGGA AGGAAGGAAG AAAAGGAAGG AAGGAAGTTT ACAGAGTTTT TTGAGGTGTT AGTGTTCCCT AAATTGTATG 001840
001841 GTCTTCAGAG GTTTACCCTC CTATAGCTTC AAGGGGTGAG TCCTGACTGG TAGGAAAATC AATCACACTC TTACTTGCCA 001920
001921 GTGATTCATT TAGGGAAGAC AGCTAACTAA GCTCTTCCAC TTTGATTATT TCATTTAATT GTAACAACCA TCTTATCATG 002000
002001 ACTTCTTCAA AATTACCCTG CCAGTAAGTG TTGGAGGACT CCCCAGAAGC AGAAACCACC ATGCTTCCTG TATAGCCTAC 002080
002081 GGAACCGTGA GCCAACTAAA GGTGTTTCTC AGGTATTTCT TTATATCTTT GGCCAAAATT AAAGAGTTAG GCTTTACTCT 002160
002161 CCAAGATACT GCAACAGATA AAAACGAGCC ACCACTGTTT TCTAATGTTG TTTTCTTGTT AATTCAATCA ACAAGTATTT 002240
002241 TCTGGTAAGT TTAGTGTTCC AGAGACTGTT AACCTGGTGA TGCACCGGTT AATGAAACAT CCTTAAGAGA AATAAAAGTT 002320
002321 GAAAAATAAG CCAGATGATA AAATGCAGTA GTGTACACAA TGCCACTTAT CCGCATGTCT TCTGTCTGTC ACCCATGATC 002400
002401 CGGAAAATGT CTTTAGTATA AGCCATTGAT AAAGATGCCT GAAAAATGTA TGTATAGAAG ACATAGTCAC AAAATTACTT 002480
002481 TTTTCCTTTG ATATCCCTTG TTACCTCAAA CAGAATTTAC CACTCCAATT CGATTTCTGA ATACATGGGA GTTAATAGAA 002560
002561 TACTCCTAAT CCATTTATAG GATCTGCACT AAGTACAAAA ATTAAAGACA TCTGAAAACT ATTTGGTGAG TCCTTATAAT 002640
002641 CCATATCAAT AATTATGGAA TATATTAAGT AATAGACCAA AAATTAATCA TCATATTAAC CAAAAACACA TAGCAAGACA 002720
002721 AGATAACTAA ATATTTTCAT TTGGAAATTG GGAAATTTAG TCAATTTTAA AACTCAGCAA ATGAGATCAT TTCACAGAAG 002800
002801 CAACCTAGGT TTGCTGGTAA ATTAAAATTA TGACATTTTG TTTTGGTTTG GGAGGGTAGT TCCTCTTCTG TAAATTGTGT 002880
002881 ACTCACATAA GAAATATATC TATGTTCTCA CGGACACTTA CTGTAGAGGT AATAATATGA AGTTAGCTCA GGGATCAGGG 002960
002961 CCTCACAGTG CAGTGCTGGT AGCTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTGCCCT GCACCTTGAG TAAAAGTTTC 003040
003041 CTGAGGCCTC CCCGGAAGCA GAAACCACCA TGCTTCCTGT ATAGCCTATG GAACCGTGAG CCAACTAAAG GTACTTCTCA 003120
003121 TGTATTTCTT TATAGCAATG CAAGAACATA CTAATACAGC TAAGCAGAGG CCATCAGGAC CAGCAACAGT CTGAGCTGGA 003200
003201 TGAGAGACAA AGCTAAACTT TGAGCAGCAG CAGGAGCTGC CAGGGAGACA GAAAGGAAGG ACAGACTCCT AAATTCCAGG 003280
003281 ATGTCTCCTT TAAGTCTGTA AGAAGCTCAG CCACCGTCTC CTTACCTGAC TCCTTTGGGA AAGAGTTTCC CTAGGTTAAG 003360
003361 CCATACAGGG ATAGGGTAGG AGATGCCATT TGGATCTAGG AGCAGAGGGC AGAGACTCAG CAGGAAGAGT GTCTCTTTGA 003440
003441 GAAGGAGACA CAGTGGAACA GCTGTGTAGG TTCACAGGGC CAGCTGTGGG TAGAGTTGAG TGTACATTTT TAGAAGCCAC 003520
003521 AATTCCCAAA AATCTCCTGA CTATAACATC AGTGCACGGA GCCAGTCAAA TGGAGGAGGA GTGGGTCCAG GCAATTCAGG 003600
003601 AAGAAGGAAA GTAACAAATG AGTGGTTGCA GGAGGACACC CTTTCTGTCG AGGTCACTAA ACAAAACATT GTCTCCTCCC 003680
003681 CTTAACTTCG GAAACAAGCA ATGGAGGGTA AAAGTGTTGC CTGGGCCCTG GGGGCAAAGG CAGTAGATAA CTTCTCTGTC 003760
003761 GTGTTCTCCA GAAGGGCCCA TTCCAGCCTC ACAGGCCGAG AAGTCTGTTC GGTTCCCAAG TACTAGAGAT GCTGCTATAA 003840
003841 GGGACTCCCG AATTTCCTTC CTGAACCAGA GGCTGCCCAG CCTTTTCTTC CTGTTTTATT TTTTCCCAGG AAGAAACTTG 003920
003921 CCTGTACAAT TACAAGGTTC TACGGTTCTA AATTCCATTC TAGTCTTCCA CATCATTTTG AAGGTATAAT ATTATTTGTC 004000
004001 AAAGTGGGAT GATAGAAGAT ATGTGTGGAC TTAAAATTAA ATTGTTGACA AGGAAAAAAA CTAAAATAAG AAAATAAGAG 004080
004081 AGAAAAAATA TATGCATGTA CAGTGGTTAG CTAGAAATAT GCCTTTTAAA TATTTGGCAT GTGGTATGTG GGCCTCAATG 004160
004161 TGTACTATTG CACTAGCTTC CCAAATATTA AAGGATGTCT TTTAAAAGAA AAACCTCTTG CTAAAAGGTT AACAGTTAAA 004240
004241 ATAACCAGAG TGGCACAGGT ACCAGTCATT AAGTGAAACC TTTCATCTTC CCAGAATAGT ACCTGTTCCC AAGCCAGCTT 004320
004321 CTTTGAAAAT CACTTTTCTC TCCTTTACTA TTTAGTTTAC AGATTGTATA GTAACAATAT AGAAACCACA ATAGTAGCAA 004400
004401 AAAAAATAAA GAATATTTTT AAATGAAAAC TCACATCCTA ACTCTAACAA AACATGAAAA TTAAACCTGA ATGCCTCCCA 004480
004481 TTCCTGATAT ATTTTTCACC TAAATATTCA GCTCTGGGAT TGCATTGTTT TTGGATTGAG TGGAAATTAT TGCCTGGTCT 004560
004561 TGAAATCTTC CACAATGTGT GTGTGTGTGC GTGTGTGCAT GTGTGCGTGT GTGTGTATGT GTGTATGTGT GGTGAATATA 004640
004641 TTTCTTTTTG TTCAGAGGAA ACATTTTTTC AATATGTATA TTTATTTTAG GCAGATTATG CTAGTAATTT TCTACAAATG 004720
004721 TGCTTTTTAA AAAATAACCT TTAATTTAAA AAAAATTATT CTTTCTCAGT GGCCCACAAT TGTTAAAAAT GCTACTAATG 004800
004801 GAGCTGGGTA TGGTGACACA CATCTGTCAT CCCAGCTACT TGGGAGACTG AGGCAGGGAT ATTGCTTAAA CTTGGGAATG 004880
004881 TGAAACCAGC CTGGGCAACA TAGTGAGATC CCAATCTCAA AACTCAATCA TTAAAAAATA AAATAAAATA AAACACTACT 004960
004961 AATAGCTTTT TAAAAAATAG TTCTTAACCA ATTTTCCTAG CACCTTCCTT TCCTCAGTGA AGTATAGAAA TATGTGGTCA 005040
005041 GGCACTGTGG CTCACACCTA TAATCCCAAT AATTTGGGAA GCCAAGGCAT GAGGATCAGT TCATTCCAGG AGTTCAAGAC 005120
005121 TAGCCAGGGT GACATAATGA GACTTGGTCT CTAACAAAAA TTTTTTTTTC TTTAATTACC AGGGCATGAT GGTGCATGCT 005200
005201 TGTAGCCCAG CTACTTGGAG GCTGAGGTAG GAGAATCACT TGAGCCCAGG AGGTCAAGGC TGCAGTGAGC CATGGTTGCA 005280
005281 CCACTGCACT CCATACCTGG GTGACAGAGT GAGACACAGT ATCAAAAACA AACAAACAAC AACAAAAAGT ATTTGTTTTA 005360
005361 GAAAAAACAT TTGGTGAGGT TTGGGCTTAA AAATATATTA TTCTAAAATA TTCATAAATA TTCTCTAGTA ATGATAAGAT 005440
005441 TAAAGTGACA AAGACAAACT TTTTTCCTGT GCAGGTCCAT CTCTCGCCTT CC
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Predicted Small Protein

Name NONHSAT083156_smProtein_4574:4729
Length 52
Molecular weight 6181.8026
Aromaticity 0.196078431373
Instability index 45.2060784314
Isoelectric point 8.84173583984
Runs 7
Runs residual 0.0169869928169
Runs probability 0.0190400484518
Amino acid sequence MCVCVRVCMCACVCMCVCVVNIFLFVQRKHFFNMYIYFRQIMLVIFYKCAF
Secondary structure LEEEEEEEELLEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEELLLL
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLL
PiMo oooooooTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTToo