NONHSAT083185
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083185 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2320 nt |
Genomic location |
chr22+:17594263..17596582 |
Exon number |
1 |
Exons |
17594263..17596582 |
Genome context |
|
Sequence |
000001 ATTTTGTGGA GATGGGGTTT CACCATGTTG TCCAGGCTGG TCACGAACTC CTGGGCTCAA GCCATCTGCC CGCCTCGTCC 000080
000081 TCCCAAAGTG CTGGGATTAT AGGCCTGAGC CCACCGTGCC TGGCCTTTCC TGTTTATCTT TGAAAATTAA ATAGGGCATA 000160 000161 AGAGAGAAGA AGATGTACTT ACAATGCAGT GGGTGGTTTT AACTCTATAG CCTTTGGGCT CTGTGGTTGG TGCTCCCCTT 000240 000241 CCTAAATAAA TGAGGTGTAT GCAGGGCCCT CTTCTGCCTT AGCGCCCTGC CAGCTGGGAC TCCAGCAAGG CCCGGGGCAC 000320 000321 CTGAGGACAG AGTGAGATGG AGGGCCGCTG CTCCAGCAGC CGGGCCTGCA TCCCACAAGT CAACTGTGTC GGACAGAGGA 000400 000401 TCCTTACAAA GAAGAGGCAG CAGGGTTGGG GGCTGGCCAG CTGCTCGTCC GCCCTAGGTA GCTTGCTCAT CTGTAAAGTG 000480 000481 GGTGGGGCAG GAGTTCCCAC CTCATGGGGT CCTGGCAAGC CTGCAGTATC CCCGAGTGGC ACCAGCCTGC TTCTGGGGCA 000560 000561 GAGCAGTTTG TGCCCCCTGA GGTACCACTG ATCCTCTTTC CCTGCTATTA GGTATTGCTC TCTCCCTCCG GTGTTTGCCT 000640 000641 TTTCAGATTA TAAAAGTAAT ATGTGTTCCC ATATTTGGCG TCTCTCAGGA GCTCAGGAAG TACTTGGCTG AGTGAACATG 000720 000721 TCCATTGTGG AAAAATGGCA ACAATATGGA TTCCATGGGT ATATTTTATA GAAGAATATG AAGAAAAGCA GCTACCCCTA 000800 000801 AACCCATGGC ACAAGCTGTT CATGTTAATT CTGTACCCGA CGCTTTCCCC ACGGGGCCTC CCCTCACTCT GAAATGGCAT 000880 000881 CCAGGTCCAT CTTGCCCTCC ACCTCTGCAT GGCTCTCCAT GCCCCATCGC CTCTCCCAGA TCCTAGCACT GGGACCACAC 000960 000961 TCTCGCCCTG TCCATTTAGG TTGATGAAAG CAGGCAGTCA CCCGGGTGGG CCAGTCTTGC CTGTGGGAGG AACATGCAGT 001040 001041 CTCCTGTCTC ATGGCTTGAA GTGTGCCAGG AAGCCTGGCC CAGCCCACCT CCCCCTGGAG TCCTTCCCAG GAGGAATAAC 001120 001121 CCCTTAGGTC ATTGACTATA AGATGAGTTC GCTCACTGGA TCCTTCCTCT CTGATGAGAC AGGAAGAAGG TACACAGTGA 001200 001201 CCAGGTAGGA GGAGGAGAGG GAGTAGAAAG GAGGGATGCG GGTGGCTGGT CCCTGCATTT GCCTGCTTCC CTGCACGGGT 001280 001281 GTCCCACTGG CCGCCTCTGC TCACCAGTGT CATGGGATTC TCTCAGAAGA TGAAAACAGC CCCTGCTTTT TTTGCTAGAA 001360 001361 TGGCTGAGCT TTCATGGAAA GGAAGCTGGA CCCAAGCAAC AGCCGACTAC CGAAGGTTGC CTGGAGCAGT GCAGATGTGG 001440 001441 GAGGAAGAAG GGCCTTGGTG CACACTGGCT TTTCTTCCTG ACTGCAATGT GGCATTGTGC CAGCTACCTC CTCTTTCTCG 001520 001521 GCCTCAGGAA AATGGAGAGA AAGCAGCCCT GAAGGTGGCT GTGACGAGGG AAGGGGCAGA GGGCCTGACA GTCAACCACG 001600 001601 CGCTATATTT TCCTGTTCTT CCTTAGGGCA AGAACTGCAT GGCCAGACTC AGGAAAGGCC TAGGTGTCGG CTGGGCATTG 001680 001681 CCTACACGTG AAGAGATCAC TCCGCGTCCC TACTGCACCT GTCACAAAGT GCCTTCTGAT ATGCCTGGCA AACCAAAATC 001760 001761 GGTGAGCGCC AGCTTGCTTC CCTAGAAGAC ATTTCTAAAT ATTCATAACA TGCTTGCTCA AATCAATCAC CTTATTTTAC 001840 001841 ATCCGCTCCA GGGAGAAATG AAGACATGGT CCTACGTTGT TCTGTAATTA TTTTCTATGT AAATTTTGTT CCTTGTCACA 001920 001921 ATTATATATG TCTTAGGGGA AAGGACCATT TCACATGTGT CACCTCATGT GATTCTCACC ACAGCCCTGT GATTGCTCCT 002000 002001 GTTTTATAAA TAATGACATA GTTCCAGTTG ATGGCCAAAG CCACAGCTAA CGAGAGGCAG GGAGAGCTCA GGCTCCCAGG 002080 002081 AGCTTCCACT CTCAGACCTT GCCTCCCGGG CTGCCCTGAG TGAAACCCCT GCTTAGCATT TGGCACAGCC AGAAGCAGCA 002160 002161 AGCTAGGGTC ACAACACAGA GAGGGGCTGT GTAATACTGG CTGCCTCTGT GCTAAGAAAA AAAAAAATCA CTGTGTGTTT 002240 002241 GTTTATTTTG GTGCAGGCCC AGTGTTCTTG CTTAGACTTA ATACTACCCT TCATGTTAAA ATAAAACCAA ACAAAAACCC 002320 |
Predicted Small Protein
Name | NONHSAT083185_smProtein_908:1126 |
Length | 73 |
Molecular weight | 7217.402 |
Aromaticity | 0.0277777777778 |
Instability index | 50.4611111111 |
Isoelectric point | 9.10040283203 |
Runs | 9 |
Runs residual | 0.0159164639092 |
Runs probability | 0.0259475161436 |
Amino acid sequence | MALHAPSPLPDPSTGTTLSPCPFRLMKAGSHPGGPVLPVGGTCSLLSHGLKCARKPGPAH LPLESFPGGITP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLEELLLLLHHHHLLLLEELLLLLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |