NONHSAT083451
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083451 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3714 nt |
Genomic location |
chr22-:19985280..19994170 |
Exon number |
3 |
Exons |
19985280..19985713,19990358..19991314,19991848..19994170 |
Genome context |
|
Sequence |
000001 AAATAAATAA ATAAAAGGGT ATTATGCAAT TTCTTACTTA TTATGTGAGG GAGCCTCTTT TTTTTTTTTG AGACAGAGTC 000080
000081 ACGCTCTACC GCCCAGGCTG GAGTGCAGTG GCGCGATCTC GGCTCACTGC AAGCTCCGCC TCCTGGGTTC ACACCATTCT 000160 000161 CCTGCCTCAG CCTCCCAAGT AGCTGGAACT ACAGGCGCTC ACCGCCACAC CCGGCTAATT TTTTTTGTAC TTTTAGTAGA 000240 000241 GACGGGGTTT CACCATGTTA GCCAGGATGG TCTCGATCTC CTGACCTCGT GATCCGCCCG CCTTGGCCTC CCAAAGTGCT 000320 000321 GAGATTACAG GCGTGAGCCA CCACGCCTGG CCAGGGAGCC TCTTTTTTAA TTTTAATTTT TAATTATGGT AGAATACACA 000400 000401 TAACAAAATT TACTATCTTA ACCATTTTCA AGTGTACAAT TCAGTAGTGT TGTTTGTTCA CATTGCTGTG CAACCAATTT 000480 000481 CAGAACTTTT TTTTATTCTT GCAAAATAGA AACTCTGTAC CCATTAGAAA ACTCCCCGTT TGCCCCTTTC TTGAAGTGCT 000560 000561 TCTACTTTTC CTATTGTTTG ACTACTTTAG ATGCCTTACA TAAATAGAAT CTCACAGTAT CTGTCTTTTT GTGACTGGCT 000640 000641 TATTTCACTT AGTATCATGA GAATATCATA TGTCAGAATT TGATGCCTGA TATTCCATTG TATATCTATA CCACATTTTG 000720 000721 TTTATCCATT TTTCCACTGG TGGACACTTG GGTTGCTTCC CCTTTTTGGC TATTGTGAAT AATGCTGCTG TGAATATGAT 000800 000801 TGTGCACATA TCTCTTGGAG ACTCTGCTTT CAATTCTTTT TTTTTTTTTT TTTAGACGGA GTCTCGCTCT GCCGCCCAGG 000880 000881 CTGGAGTGCA GTGGCACGAT CTTGGCTCAC TGCAAGCTCC GCCTCCCAAG TTCACAAGTA GCTGGGACTA CAGGCGCCTG 000960 000961 TCACCACGCC CGGCTAATTT TTTTGTGTTT TTAGTAGAGA CGGGGTTTCA CCGTGCTAGC CAGGATGGTC TCGATCTCCT 001040 001041 GACCTTGTGA TCCACCCGCC TCGGCCTCCC AAAGTGTTGG GATTACAGGC GTGAGCCACC ACGCCTGGCC TCAATTCTTT 001120 001121 TAGATACATA ATGCAGAATT TTCTGATTGC TGGACCATAT GGTAATTCTA TTTTTAATTT TTTGAGGAAT TGCCATACTG 001200 001201 ATCTTACATT CCCACCAGCA GTGCACAAGG GTCTTAATTT GTCTGTATCT CTGCCAAAAC TTTTTTTTTT TTTTTAGACT 001280 001281 AGCCATCCTA ATAGGTGTAA GGTGATATTT CATTGCAGCC TTGATTTGCT CTTCCCTAAT GATAGAAATG TTGAGCAAAT 001360 001361 TTTTTAACGT GCTTGTTGGC CGTTTATATA TCTTCTTTGG AGAAATGTCA GTTCAACTCC ACTCATTTTT AAATTGGGTT 001440 001441 ATTTGTGTTT TTTTGCTGTT GTTAAGTTTT GGGAGTTCTT TACATATTCT GGATATGAAT TCCTTTTCAG ATATATGATT 001520 001521 TACAAATCTT TTCTCCCATT CTGTTGGTTG CTTTTTCACT ATATTGATTG TGTCCTTTGA TGAACATACA TTTTAAATTT 001600 001601 GGATGTAGTA CAATTTATTT TTCCTTCTGT TGCCTGTGTT TTTGGTATCT TATCTAAGAT ATCATTGCCA AATCCAGTGT 001680 001681 CATGAAGACT TTCCCCTATA TTTTCTTCTA AGAGTTTTAT AGTTTGAGGT CTTATGTTTA GATCTTTCAT CTATTTTGAG 001760 001761 TTAATTTTTG TGTATGTAAT AAGGTAAGGG TGTGAGTTCA TTCATTTACG TGTGTGTATC CAGTTCCATC ATTTGTTGAA 001840 001841 AATACCATCA TTTCCCTAAT GAATGGTCTT GGCACCTTTA TTGAAGGTCA TTTGACCGTA TTCATGAGGG TTTGTTTCTG 001920 001921 GGCTCTGTAT TCTATTCCAT TGGTCTTTGT GTCTGTCCTT ATGCTAATAC CACACTGTTT TGATTACTGT AGCTTTGTAG 002000 002001 TAAGTTTTGA AATCAGGAAG TGTGAGTCCT TAAATGTTGT TCTTTTTCCA GATTGTTTTG GCTCTTTGGG CTCCTTAAAG 002080 002081 ATCGATATAA ATCTTATGAT AGATTTCTCT GTTTCTGCAA ACAATGTCAT TGGGATTTTT TTTTTCTTTT CTTTTTTTTT 002160 002161 TTTGACAGGT CTTGTTCTGT CATCTAGGCT GGAATGCAAT GGTGTGATCC TAGCTTACTG CGGCCTTGAA CCCCTGGGTT 002240 002241 CAAGCAGTTC TTTAGCCTCA GCCTCTGACT AGCTAGGATT ACAGATACAT GCTACTATGC CTGGCTGTCA TTGGGATTTT 002320 002321 AATGAAAAGC TTTCAGTCTT TCACCATTGA GTATGATGTT ATGGGCTTTT CACATATAGC TTTCATCATG TTGAGAAAGT 002400 002401 TTCCTTCTTT TCCTAGTTTG AGTGTTTTTA TCATGACAGA CTATTGAATT TTGTTAAATG TTTTTCCTGC ATCATTTGAC 002480 002481 ATGATTGTGA TTTTTGTCCT TTATTCTATT ACTGTGGCGT ATTACATTGA TTGATTTTTG TACATGGAAC CATCCTTGCA 002560 002561 TTCCAGGAGT AAAATCCCAC TTGGTTAGGT TTATAATTCT TGTAAAATGC AGCTGAATTT GGTTTGCTAG TGTTTTTTTG 002640 002641 TTTGTTTGTT TGTTTTGAGA ATTTTTGTTT CAGTATTCAT AAGGGTTATT GGCCTGTGGT TTTCTTTTCT TGTAGTGTCT 002720 002721 TTTCCTGGCT TTGGTATTAG GGTAAGGCTG ACCTCATAAA ATGAATTAGG AAGTGTTCCT TCCTCTTTAT TTTTGGGAAA 002800 002801 AGTTTGAGGA CGATTGGTGT TAAAATTACT TGAATGTTTG GTAGAATACA CCAGTGAAAC CATCTTTGCT GGAGGTTTTT 002880 002881 GATTACTGAT TCAGTTTTGT TGCTAGTTGT AAATCTAATC AATGTTTTCT ATTTCTTCAT GATTCAGTCT TGGTAGGTTG 002960 002961 TGTGTTTCTA GGAAATTTTT CCATTTCATC TGGGTTATCT AATTTGTTGG TGTATAATTC TTTATGGTAG TCTGTTACCA 003040 003041 TCTTTTTATT TTAATGTTAT ACAAAGAAAA GGAAAACAAA TTGAGGTTTT TTTTTGTTCT GTTTTATTGT TTGATTGTTG 003120 003121 TTTGGCTTGG TTAGATTTTG TTTTGTGGTT CTTGGATTTG TACCTAATCT GTTGGAGTCA TCAGTCCACA AACCCATGAA 003200 003201 TTTCCTGAGC CAGTAAAAAT GCTTCCAATG GGCAGCTGAC AGAGGACTGC TACAGACAAC TGGAGCTGCC TTAATGCATT 003280 003281 TGGTGACTGC TGCACCTGCC CGCTGAGGCC CCTCAGCCTG GTGGACAGCT GTCTCCTACA GTGCCTCAGT GGGGCCGTAG 003360 003361 GGCATGGTAG GGCAGGGCTC CCAGGCCCTG TGGCTGTCTG CCTCTGATCC CAGCCTAGCT GTGAACCCTG TCAGTTCGCT 003440 003441 CCTCAGGGAT GCTTTGGTCC CTGTGCCCAC CCCAGAGTAC AGAGGACGGG GCTCAGCTCC ATGTCTGGGC CTTTTACACC 003520 003521 CCGCCTCCGC CTCCACTGCG CCTGCCCTCC CTAAGGCAGG GCATGGGCCA CACGGCACCT TGCGGGGTGG GTGCCCGTCC 003600 003601 CGGTAAGCCG TGGAGGCAAT GGGCCAGCCA CCGCCACCAA TGTCCGGCCC ACTTAGTAGG GCACTACACC TCTCCACACT 003680 003681 CCTACAAACT TCATGCTCAT CATTGGGGGC GGAG |
Predicted Small Protein
Name | NONHSAT083451_smProtein_2288:2446 |
Length | 53 |
Molecular weight | 6001.2334 |
Aromaticity | 0.173076923077 |
Instability index | 63.4519230769 |
Isoelectric point | 6.50494384766 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0446819368389 |
Amino acid sequence | MLLCLAVIGILMKSFQSFTIEYDVMGFSHIAFIMLRKFPSFPSLSVFIMTDY |
Secondary structure | LLHHHHHHHHHHHHHHLEEEEELLLLHHHHHHHHHHHLLLLLLLLEEEEEEL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | TTTTTTTTTTTTTTTTTTooooooTTTTTTTTTTTTTTTTTTTTiiiiiiii |