NONHSAT083572
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT083572 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2107 nt |
Genomic location |
chr22-:20970517..21011201 |
Exon number |
9 |
Exons |
20970517..20970729,20975829..20975881,20975986..20976088,20976214..20976413,20976996..20977138,20980383..20980466,20981450..20982100,20992898..20993507,21011151..21011201 |
Genome context |
|
Sequence |
000001 CCTGTGTCTG CATACCCTGA TGTTCGGTGC CCAGCTTAGA GAAGGAGAAG GGGCTTACCT ACTGCAGACA CCTGTCCACT 000080
000081 GAGAGGACCC ACTTGTCATC CCTGGTCAAT TACATGATCA TGTCTCTGGA CTTGCCCTGT GATGCTGGAC AGGAGCTGAC 000160 000161 AGCCGGGATC TGGGAGCAAT ACCTTCAGGA TAGCACAGCA AGGTTTAGCT GGGCTTGATC TGCAGTGGTG TAGAGGCTGC 000240 000241 AAAGGAGGGG CGATTTTGTT ATGTGAGAAA TAAGCCCACC TACTTGTGGG GACTCAAGAT GACTTGTTTG GATTCTGCAT 000320 000321 ATGCAAATTG AAGATCTCCT CCTCTTCTTG AGAGTTCCAA GACCCACAAC TCACTTTTGC CCGTGAGTGT GGAGATTGAA 000400 000401 GGGGATGGAA AACATGCTCA CCTGGGATGA ATAAAGAGAA AGTCAGTGAG TAAGTATTTA TTATGAAGCA TTAGTTTGTA 000480 000481 TCACTCCTGC ACAAGGTGCT GAGACATGGC CCCAGCCAGA AGGAATTTAC AGTCCAGTCA AAACTGCCTA GAAGTGTGAC 000560 000561 AGCAGCTGAG TTGGAGGGAG GCAGCTGAAC CAAGAAAACC TTATCAGCAC TATTTGAAAC TTTTATCTCA TCTGGCTTGG 000640 000641 CGCCTGAGGT TCTCCCATTA GGGGTCCAGC TTCATCCTTT TGCATGTGGA TATCCAGTTC TCCCAGCACC ATTCTTCAAA 000720 000721 GAAATGAGTG TTTTCCCCAC TGAATGGTCT TGTACCTAAG TTTTTACTCA GCTCGGTGAA AACGTGCTCT CACTGATGAG 000800 000801 GCTGATAAGG TTTTGTCTTG AATTGGGACC TGGGAATAGT GCTGGTAATT TGGAGATGAC ATGAACATTT ATTTGGGGCT 000880 000881 ACCCCAGTGC TCTCTGCTGG TTGAGCAACT GCGCCATCCA GCCAGTTGGA AGGTTTGTAA TGAGGGAGCT GAATGAGACA 000960 000961 GAGACGAGAA GAAAGGGCGA AAGTGGAAGA ACTGCATCAA GAATTCAGGA GTGAAGAGGG AGCAATTCTC CTGAACATTC 001040 001041 CATGAAATAA TCTAAATAAA ACCACCTAGT ACCAAGCCTG CCCTGTAGGA GATGCTTGGT GATGTTCTGG TTGTCTTTGA 001120 001121 GTCAAGATGG AGTCCATCTG GGTCGGAAAG ATAAAATGAC AATCTTGCTG AAGTTTTTCT CCATCCGAGG TGGAAGTGAG 001200 001201 ATTTCCCACT CATGCTCTCC AGCGCTTGGA CTTGCTTTTG GGACCAGCTC TGATGAACCT GTGTACACTG AGTTGCAAGT 001280 001281 GATGGACAAT AGCTCAGACC AACAGTCCAC AGTGGTTTGC TAAGAAGGCC ATTTTCAACT CTCCACTGGA GGCTTTTATG 001360 001361 GCGTTCCCTC ACCTGCAGCG GCCCAGCTTT CTACTGGAGC TGCACGCCAT CTCCCCATGG CTGGTAGCAT TTTCGGCAGC 001440 001441 CTGGATGGTG TCCTTGTGGG CTGGAACCTG CGCTGCTTAC AGAGGCGCGT GAATCCTGTG AAGTACAGCA TGGTGATGGA 001520 001521 ATTTCTCGAC CCTGGGAAGA GATGGGGTTT CACTATATTG GCCAAGTTGG TCTGGAACTC CTGACCTTGT GATCTGCCCA 001600 001601 CCTCGGCCTC CCAAAGTGCT GGGATTACAG GCGTGAGCCA CCATACCTGG CCTGTCTGCA GCTTTTTATG AGATGGTGGA 001680 001681 AGTTCTGAGC AAAGACTCTT GTTGAGGCAC TGCTCAGGAG CAGGGCACTG TCCCCACAGG GTCTCGTGAA GGCATCCATC 001760 001761 CAGGAGTGCG TCCTTGACAG TCCTCTGTAA CACAAGATCC AGTTCCGCCC AACTAAGGGC CTTGGCCTGA ACCTGGCCTT 001840 001841 GAATCCGTTC GAGTATTACA TATGCTTCTT TGCCTTGAGC CTCAACACAC TAAAGGACAC CAGCCATGCC CTTTGCTTCC 001920 001921 TGTAGCCTCC AGCACACTAG CCCCCTGAAG CGACACTTCT CTCATCAGAT GTCTGTGAAT GCAGACCCCG CCTCCCAGGA 002000 002001 GATCTGGAGG TCAGAAACTC TGCTCCGGGT GAGAGCTGAG CTGGTCTCAA CGTCTGTTTC AAAAGAAACT GGTCAGCCAT 002080 002081 CTTCCACTAT ATGGGTCAGA GTCCCAG |
Predicted Small Protein
Name | NONHSAT083572_smProtein_113:217 |
Length | 35 |
Molecular weight | 3848.2952 |
Aromaticity | 0.117647058824 |
Instability index | 54.8529411765 |
Isoelectric point | 3.76898193359 |
Runs | 5 |
Runs residual | 0.0390915860015 |
Runs probability | 0.0267620561739 |
Amino acid sequence | MIMSLDLPCDAGQELTAGIWEQYLQDSTARFSWA |
Secondary structure | LEEEELLLLLHHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |