NONHSAT083959
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083959 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3665 nt |
Genomic location |
chr22-:24025914..24035781 |
Exon number |
3 |
Exons |
24025914..24026054,24029018..24029182,24032423..24035781 |
Genome context |
|
Sequence |
000001 GTTTGGTTTT CTGCCCCCGA GGGACCTGAA TGCATCATGG CCTAGAACCC AACAAGGGTG GGAAGAGAGA GTGACATTTT 000080
000081 CTCCCAGGCC ATCCACACTC TAAGAACTAG AAGGTGGCTC AGGCCTGCCC ATCCTGAGGC CTCGTCTTCC TCCCATCCCA 000160 000161 ATCAGCCCTC TACTACTCCT CTCCGTACCG GTGCACTTTC CTTGTGGCAG CTGCAACTAT GGGCTCTGTT TGGGTGTCTA 000240 000241 CCATAGAATC CAGTATGCAT CAGGTACCTA ATAAGTGCTG AGGGTAGTGA GGCTCCTGAG CAGCTGGGTG AGTGACCCAT 000320 000321 GGCCCTGCCT GCCCCACAGT GAGCACCTGC CCTGCCCTGC TTTCTGTCCA TCTCCTGTCA CTCAGTCTGC ACAGTCACTC 000400 000401 TGTGCAGCTG GCGCTGGTGA TGTCCCATCT CTGCCGTCCA CATGCAGACA GGGAAGGCTT GTGGGTGAGG AAACTCATCC 000480 000481 AGATCCCACG GTTGGTAAGA AGTGGGGCTG AAATTGGACC GAGGGCATTG GCTGCTCCTC AGGGAGAGGC TGGTCTGAGA 000560 000561 CAGCTGGTGC CAGAGACACA GCCTGCAAAG CTCAGCTGCT CACCGCATCC ATGAGGGTCA GCTGCTCTGC CAGCAGCCTG 000640 000641 GGAGGGAAGG TCGTCATGTC AGGCAGCTCC TCACTGGGTT GGTTCTTTAC AGACCCACGA CAGGGACAGG AGGACTCTGG 000720 000721 GGCTGACTGT GGCTCCAGCA CTGTCCCTGG AGGGGGCCCT TCCCCTGGTG CTGGTGCTGG CCCTGGTGCT GAATGTAGAT 000800 000801 ATCCTGGTGG ACCCAGGGCT GCAGGTGACT CTGGCTCCAG AGCAGGCCCC AGGTCCGCCA GCAGTGGTGG TGCTGGCTCC 000880 000881 AGGGCCGGCA TTGTTAATGC GTGTTGCCCA GGACGTGGAG CAGGATCTGG AAAAGGAGAA AAGGTCACCA CACCAGTCAT 000960 000961 TTTTCACTGG GTTTTCCAAG CACAGAAATG ACCGGGTGGA ATTTAAGGGA ATTGTAGCCC CAAAACACCA CCCCCGGAAA 001040 001041 GTCTTGCAGA CTGCAAGCCC CCTCACCATC TGGCTTGGCC TCGTTGGGCT CCGGAAGCAC CAACTGGCCT AGGACAATTT 001120 001121 CCTGATGGTC CTCCAAGCCC AGTCCAGGCC AGGAGAGGTT CCTGAAGGCC AGCTTTATCC GGAAAGATGA CCGTTGCGGG 001200 001201 GGCTGATAGT AAACTGAAGT GTTTTCGGGG GGCCAGTTGA ACAAAATGGA GGTGATGGTG CTGGTGATGG AGTAGACAGC 001280 001281 TGAGTCAGAG GCCTGGCCTT CTCCCACACA ACCCTCCAGG GCACCCCTGC GTGGTTCTGG GTCCCTGGCC TGTTGCTGCC 001360 001361 AGTGTGGAGG ACAGCCCCAC CCTACCGTAA GCCATCAGTG CTGTCCTGGA AGGGGCAGAC CTGGCCATAC AGCAGGGCTG 001440 001441 TACAGACCCT CGTGCGCCCT GGCGTCCCAC AGACATTCTC TTCCCAAAGG CCCTGGAGCA CAGCACTGTA CACCTGGGCA 001520 001521 CTCAAGACTG CAGCTGCAGG CAGATTTGTG AGCAGCTTCC TCATCAAAGC TCCAGATCTG GGTCCCCTGG TCCTGGGGTT 001600 001601 AGGAGGGAAG GGGCAGATGT CGGGGGGAGG AGGACAGGGA GAGCTGGGAA GCCACGGTGC TGAGGGGGAT GGGTCTCTCA 001680 001681 GTGGCCAGCT GTGACCCCAG CCTCCCCTCT GCTTTGCAGG GGACCTAAGT CTCCATTTAC AGAACTCACT ATTTGCCTCT 001760 001761 TGTGGGGGAA GTCCCCAGAT GTCAGCCTTC TCGTGGGAAT TATAAGAAGT ATGAGCCCCA GAGCTCCTTT AGTCTCTCCC 001840 001841 CAGCCAGAGT CCACATATTT TCCCCCATGT TTTGTGGGTG AAAAGGCCCT TCAGAACCCT AAATCCACCC AGTTTATATT 001920 001921 TGTTGCTGGG CTGCGTCATT CTAGTCAGAA TCTGGGAGGA TGCCACCATA CGTAGAGGAG GCCATGAGGG TCtcacctgt 002000 002001 aacattctgt agatatgact tgtttattct gtctactgtg agtgcctgac tctgagtaga atcaaggccg ggggattgtc 002080 002081 atctgctttg tttatgaaat tatgccaagc cccaagaaga gcgatgcaca aatgaggtgt tttgaatgta tgtgttgaat 002160 002161 gagtgaaCCC CAACCTTTGG AGAACCCCAG TGAGCCTCTC CAGATGTCTG AGTGGGCCTG TGGCTCCTTT TTCAGCACCA 002240 002241 AGGGACCCCT CTTCTGTCTG TGTCAAGGAG AAAGACCAGC CAGAAGGAAT CTCAGACATC CTTTACCAGT GCCATCGCAG 002320 002321 ACTTGGTTTC TATGTGTTTT TCCAAACAGT GAGTGATACA GGCCATTGAG GCAGAATGCT GAGAGCTGCT TCAAGTGAGG 002400 002401 GGGAAGAGAA AAGTAACAAA CATGAATCAC AGCACCCCCA GCAGATTTTC CAGAGTTTTA GGCTCTAGGG ACCCCTTTGT 002480 002481 TTGCTGtgtc ttagatcatt gagtccctac aagaaccctg tgaggttcgt cttctcacta ctccctgttc cagaggagcc 002560 002561 aaccgaggct ccgagaggtg catcttcaag acagagccag taggggacag aggcaCCTCT GTGTCTTGGA GGGGGATGGA 002640 002641 CACTCACCTT CTAACCAGTA GTTCCAAAAA GTGTGGCACA GTGATAAAGT CCCAGGAGGG GCCCAGGCAG GTGGCATAGG 002720 002721 AGGAGATGGG TTTAGTTAGA AAGGCTGGAA CCAGGGACTC CCAACAGCTT CTCCCCAGTG CCGGGCTGGA AAGTTAGCAT 002800 002801 CCTGCAGATC TCATTTTCAT ACTAGGGGGA CAAGGAGGGA CATGGGAGTC AGTGGTAACA CCATGGACCA CCAGAGGATC 002880 002881 GGGATCTGGA ACTCACACCA AGAAGCACCA ACCCTTCAGG GACTTGTGCA TATGGAGAAC CTGGGTGCCC ATGGTGAAAA 002960 002961 GCGTTCTAGG CTTTCAAAGT AACATTGCAT GTGAGGATGG AGAATGATAA AACGATTCCT GCCTTCAAGG CATCGTCCCG 003040 003041 GTGTTTGTCA GCTGTGGGGC AACAGCACCC TCTGTGTCAG CAACCTGCAT GAAGAGCATC ATCCCTGCAA GTCCTCAAGG 003120 003121 CCTGGGGAGG CCTCATCCCC TCCTCATTTC AGCAACAGCA CACAGGACAA TACGCTCTAG AAGAACTCTT TGACTTAAAG 003200 003201 GTATATGATT GTTTTTGTTC CTTTAACATG AACGTGAGTC TGGAGAAACA GCTACGGCCA TCCCAGCCCT GGCCAAGGGG 003280 003281 AAAATGCCGG AAGACTCCAG GGTGGGAGGA AGCGCGTCCC AAGGCCCAGG ATCTGCGAGG CGACTTGGGG AAAACGCAGa 003360 003361 aaataaagca tgcgaagaag ttaacttggt gccattgggc agagggtgag agcccagcaa aCCGGAGAGA TCAGCTGCCC 003440 003441 ACATCAGTGG CGAGGAGTGC GGAGAGTGGG TGAGGCTGGG GCAGGAAGCA GGCCAGCCTG CCAGAGCCCA GGAACAGGTG 003520 003521 AAAGGACCTG CTGAAGCTCA CACCCGTGGA CCACCCAGAC TGCCTGCCGC TACAGGATGC CCTCCGCATC TCCCAGGACT 003600 003601 TCTTTCCGGC ATCAGTGTGG ACATTGACCC CACTGGACTG CAGTCACAGT GGACTCCCAA GGGGC |
Predicted Small Protein
Name | NONHSAT083959_smProtein_3227:3472 |
Length | 82 |
Molecular weight | 9203.3531 |
Aromaticity | 0.0493827160494 |
Instability index | 54.2703703704 |
Isoelectric point | 10.1057739258 |
Runs | 12 |
Runs residual | 0.00596844084703 |
Runs probability | 0.0147279632574 |
Amino acid sequence | MNVSLEKQLRPSQPWPRGKCRKTPGWEEARPKAQDLRGDLGKTQKIKHAKKLTWCHWAEG ESPANRRDQLPTSVARSAESG |
Secondary structure | LLLLHHHLLLLLLLLLLLLLLLLLLHHHLLHHHHHHLLLLLLLLEEHHHHLLLEEEELLL LLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |