NONHSAT084442
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084442 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5052 nt |
Genomic location |
chr22+:26036612..26043417 |
Exon number |
2 |
Exons |
26036612..26041010,26042765..26043417 |
Genome context |
|
Sequence |
000001 TTTCAAATTT TCTCATAGAA ACCACTTATA TTTAATACTT TCAAAAGTTC TTAACTTACA TTTTATAAAA AGCAATACAA 000080
000081 TTCTTTCTAC TAATTTTTGA AAAATTATCG TGATGGCGGG TGTTACATAC ACTAAAAAGT TAATCAATAT TCAGCATTTT 000160 000161 GCAGTGGTTC AAATATAGCA ACAAAGTAAA CACATTTCAC AAATATCTAC TAAGCAGGTG TTAGGTCACC ATTTTTTACT 000240 000241 CTTTAAGATC TGGAGAAATT GCAGCGATGA AGTGAACTTG TTAGGCAAAA TATTTCCTTA TTTTTGCCTC TCATATTTTG 000320 000321 CCCTAATCTA GGCCATGCTT CATTTGCTTT TTATATAATT TAAGGCTGAT GAAGGTAAGT TGCGTTCAGC CTAGGACACA 000400 000401 GTGATCTAGG ATTTAGCCAA AAGGCAAATA TCTTTCTTCC TGCTGCTCAA TTTTAGCAGC TCCATTTAAA CAGCTGGTAG 000480 000481 AAAGTAAAGC TTCAGTTTAT GTGCACATAG GAGGAAAATA ATATTTTGTG TTTTCTATTG TGTGTTGAAC TAAGTCCTTG 000560 000561 GCTTATTCTA CTGACCGACA ATGGAGATTT CCTTAAATAA ATAGGTAAAC ACATTCTAAG TTGGGTGTTC ATTCATTCAA 000640 000641 CTCCCTCTTT CCCTCATCCC TCCTCTTTCT GTCCTCTTCC TTCCTCCTTT CCCCCGACTT CCCTCCCTCT CCTTGTACCT 000720 000721 TTGCTCTTTC TTCTACCTTT CTTCCTTTGT TCTCTCTCCT GAGCTCTGTC TTTGTTACAG TCAATGCTCT TGTGCAAATG 000800 000801 TAGTAGAGAA TAAAACACCT GTACCCTATG CATTGCAGCT TACATTGTAG TGGGAGAGGT AGACAGTAAA GAAGCAAATA 000880 000881 TAAACATGCG ACAATTTTTG CTCATCGTAA GTGCTACAAA GTGTTTTGTG GTGTGTGTGT GTGAATGGAT GCGAGATAGA 000960 000961 GACAGCAGGA CAGTGAGAAT GAATGAGAAT CATGAAAGGC CTCCTCAAGG AAAGGGATAT GTGAAGTGAG CTAGTGAGCT 001040 001041 GTTCATTTAG AAGATCCAGG AAAAGTGTGT GAGGCAGTGG GAATAGCCGG TAAGAAACCC TGAGAAGGGA ATGAGCTTGG 001120 001121 TGTCAGAGAA ACTACAGTAC AGAAGCTTGG CCTAAGTGAA GTGAGCTTGG GGGGAGCACT GTGAGATGAG GCCAGAGAAG 001200 001201 GAAATGGTGA CTCCAGAGGA CGTGGGTAGG CTATGGTGAA GAGTTTCAGT TTGATTCCAA GTGTAGTCAA AAGACAGTGG 001280 001281 TCCATGTGTG GTATTATTTC ATTTTGTCAT TTAGACATTT TGAAAACATC TCTAATTTGA TCAAAATACT TAAGTTCAAA 001360 001361 TTCTCATGTT AGTTTTGTCT TCCAGAAATA GAAAAAGAAA TACATGTGGC AAAAACTGAC AACATTGAAA AAAGATGAAC 001440 001441 AAATCTACAA TTACAAATGG AGAGTTCAAC ACTTCACTGT TGATGATGGA TAGAATAAAT AGACAGATGG CCGCGCGGTG 001520 001521 GCTCACGCCT GTAATCCCAG CACTTTGGGA GGGCAAGGCG GGTGGATCAC CTGAGGTCAG GAGATCGAGA CCAGTCTGGC 001600 001601 CAACATGGTG AAACCCCGTA TCTACTAAAA ATGCAAAAAT TAGCCGGCCA TGATCGCGGG TGCCTGTAAT CCTAGCTACT 001680 001681 CGGGAGGCTG AGGCAGGAGA ATTGCTTGAA CCTGGGAGGC AGAGGTTGCA GTGAGCCAAG ATCGCGCCAT TGCACTCCAG 001760 001761 CCTGGGCGAC AGAGCAAGAC TCCATCTCAA AAATAAATAA ATAAATAAAC AGACAGACAT TCTGTAAAGA TTCAGAGGAT 001840 001841 GATCTTTTAT TTCTATGGAT TTAGGGGGTA CAAGTGCAAT TTTGTTACCT AGATACATTG CATAGTGGTG AACTCTGGGC 001920 001921 TTTTAGTGTA CATTGTACTC AATCTGTGAT TTTTCATGGC TTACTCCTCT CCCATCCTCC TGCCTTTTGG AGTTTCCAGT 002000 002001 GTCTATTATT TTACTCCCTA TGTCCATGTG TACCCATTGT TTAGCTCCCA CTTGTAAATG AGAATGTGCA GTATTTGAGT 002080 002081 CTCTGTTTCT GACTGACTTC ACTTAGGATA ATGGCCTTCA GTTCCATCTG TGTTGCTGCA GAGGACCATC TTGAAGAACT 002160 002161 CTATCAAGCC CACTTGGTTT AATTGCCTTT GTATTCTTTT AAATGAAACA CTCCACCCTA TAAGAACAGA ATGCACCCTT 002240 002241 TCTTCAAGTG CCATACAGCA TTCCGTTAGA TAGACCAAAA GTTTCAATGC ATTTAAAAGC ATTGAAATCA TACCAAGCAT 002320 002321 GTTCTCTGAC CACAACAGAG CTAAACAGAA AATCAGTGTC TGAAAAATCC CCAAATATTT TGAAATTAAA CTACACCCTT 002400 002401 CTGAAGGACT CACGGATCAA AGAAGAAATG ACAAGGGAAA TTAGAAAGTC CTTTGAAATG AATAAAAATG AAGAGACAAC 002480 002481 GATTACTCTT AAAATCAGAA TACTAACATA CGAACAGATA GAGATGTGTA TCCTTCCCAT TTGCCTGCTT CTTGAATTTC 002560 002561 CTACTTCCTG CCTATGTTGG GGTCGTTGCA GTTTCTCCAT GGGAGGAGCG TGGCTGTGCT CCTGCTGCAG GTGTGCGCCT 002640 002641 GACCCTGGTA AAGTCTGGCT ATGCCTATTT AACTAGTACT CTTAGTCATT CTACTCTAGT TTGAGTGAAC GAACACTTAC 002720 002721 CATTTTCAAA GGCCACGTTC CGGGAACTAT GAGGGGAATT TATGGATCAG TTACAGACCA GTTCAAGTTA CAAGATCCTT 002800 002801 ATGCTAATGT TAATTAAAAT CTCATCACAG CCACTTCCTT TTTCAGTCCC ACCTGGGGAA TTCTGGTCCA CTTCATCTCT 002880 002881 ACATGGTAGA CTTTGTGAGT CTTTCTTCAG TTCCTTTCTG CAGCTTCTGT TTCTGCGAAC TCTCCGTTTA ATTGTTTTGA 002960 002961 CTTTTTGGAA TTTTATAATC TTCAAGTATC TCTACCTTCA GTCTGGTATC AGCTTGTTCT ATTTAATTTT GTTTATCTAG 003040 003041 GCGTCACCAT TAGGCATTAA GCTAGGCACT AGGTTTTCAA ATGGAATGGG AGCCTTATAA ATCAGGTAAT TAATTAGTGT 003120 003121 GTGGTAAATA TTTTGACAGA ATGTTGGAAA GGCTAAGTAA ACATTCATTC AGTGAACATT TATTGGCCAC CTACTGTGTA 003200 003201 CCAGGCATTG TGCAATAGGG TCTGTCTCAT CAGAGAAGAC TTCAGAGCAC AGTTGGCTTT TGAGTCCAAT TCTGGTTATT 003280 003281 TCAGGAGTTT TCAAGGTACA GAGAGGGGCG TGGTATTCTA GGCAAAGGTG TTTAAAGGTG AGGCTTGTAG TTGTGAAGGA 003360 003361 GTAAAGCATG ACCTGGGAAT GGGTAATCTG CTCTGGCACT AGGTATTCGG TAGGGACTTG GAAATAGTGA GTGAGTGGCA 003440 003441 AGAGAAAGGA CTAGAAAGGT TTGGGAAGAA AGGACTAGAA GGGTTCTGGT GTTTTTTTTT TTGTTTGTTT GTTTTTTTTT 003520 003521 TAGGGAGTTT GGTCCTATTT TAGTGGGCAT AGTGTTTATT AGTGTCTTGG TGATTCTCAC CAACACATAC TGTCTGTATC 003600 003601 TCTTATTCCT TTGGTTGTTA TTTTGGTCAC TACAATGGTC AGCGGCTCCA AGTGGTGGTG GTGAATGCCA GCCCTGTCGT 003680 003681 ATCATACTTT TGTGGAAAGT GGGGGGCGGG GGTGAACATG AATAGAGAAG GAATCCTGAA GCAAGGAGCC AAGTATGTGG 003760 003761 TATTTTTCTG CCTGGAGTAT TTCCTTCTAG GAATTAATTA ATTCACTAGC TTCTTGAAAT CTTTTTTTTA AAAAAAAAAG 003840 003841 TAGAGGAGGA AGAGGTTGAG GTATAAACAC ATTGCTTTGA AAACACCCTT GTGGGATAAA ATTTCAATTA ATTGCCCACC 003920 003921 CTGAAATTTT TTATTTTTTT CCTTTAGGTT TCTTGCTATT TAAAGATTTT TGTTTGAATG AAATTAATGA AGCTGTACCT 004000 004001 CAGGTGAAGT TTTATGAAGA GGTAAGAAGT AACTGTTTTA CTGATGCTTT TCTTTCAAAA GCATATTTAA ACTGTACTTT 004080 004081 GGAACATATT AAGACTACTT AATATCTTAC AAATATTTAG AAATTCATTG AAAGTAATTA GTAGTGCAAA ATATAGTATC 004160 004161 AAGTTTGAGA TGCTAACAGG TATGAAAAGC TGAGTATGCC ATAAAAGTCG CATTCTTAAA GGCTTCAGAG TGCTATGGAA 004240 004241 GCAATGAGGG ACAGTTGGAC TAAAGTTCCA GAGATGGGAG GCTCATCCAG AGCTGCACCA AGGAGGACCA GTTATTTTAT 004320 004321 TTTCTGTGGA AGCGTGCTAG TTCTGGAGAT GTGAGCAGAG GCAGAGGACT GCTACTAGCT TTGAAAGAGA TACTAGCCAG 004400 004401 GATCACGAGG TCAGGAGTTC AAGACCAGCC TGACCAACAT GGTGAAACCC TGTCTCTACT AAAAATACAA AAATTAGCCA 004480 004481 GGTGTGGTGG TGCATGCCTG TAATTTCAGC TACTCAAGAG GCTGAGGCAG GAGAATCACT TGAACCCGGG AGGCAGAAGT 004560 004561 TGCAGTGAGC TGATATCTTG CCATTGCACT CTAGCCTGGG TGACCGAGGG AGACTTTGTC TCAAAAAAAA AAAAAAAAAA 004640 004641 AAAAAGAAAA AGAAAAAAAA TGAAATGGCC ATCATTAAAG GAGAGAAAGA TAATTGCCAG CCTAGAATTC TATTCCCAGC 004720 004721 AAAAATTTCC TTCAAAAATG GAGGACGAGG AGGTGGAGGA AGGAGAGGGC CCCGGGCCTC ACCTCCACCC ACCGCCCCCT 004800 004801 CCCACCACCC GGAGCTGCAG CAGCAGCGAC TCATGAGAGC ACAGCCAGAG GACAGATTTG ATAATGGGCT GCATTAAAAG 004880 004881 CAAAGAAAAC AAAAGTCCAG CCATTAAATA CCTGAAAATA CTCCAGAGCC TGTCAGTACA AGGGTGAGCC ATGGGAGCAG 004960 004961 AACCCACTGC AGTGTCACCA TGTCCATCAT CTTCAGCAAA GGGAACAGCA GTTAATTTCA GCCGTCTTTC CATTCCATTA 005040 005041 TACCATTTGG AG |
Predicted Small Protein
Name | NONHSAT084442_smProtein_4664:4876 |
Length | 71 |
Molecular weight | 7724.7069 |
Aromaticity | 0.0428571428571 |
Instability index | 57.7428571429 |
Isoelectric point | 10.8408813477 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0402068735403 |
Amino acid sequence | MAIIKGEKDNCQPRILFPAKISFKNGGRGGGGRRGPRASPPPTAPSHHPELQQQRLMRAQ PEDRFDNGLH |
Secondary structure | LEEEELLLLLLLLEEEELLEEEELLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHL LLLLLLLLLL |
PRMN | - |
PiMo | - |