NONHSAT084583

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT084583

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3541 nt

Genomic location

chr22-:27676304..27679829

Exon number

1

Exons

27676304..27679829

Genome context

Sequence
000001 ACATGCTTCT CCCCTTAATG ATGGAAACCC ATGCATTCTC ACACAGAAAC CACGGTTTTC TACTTTCTTC CTGCCCAAGG 000080
000081 AGAGAGAAGA TAGCCTCAAA AACAGACGTA GTCTCTGGAA AATTGCCTGA TTCTCTACAT AAAGTGCATG GGAAACTCAA 000160
000161 GCCATGAGTA GTGTTTGACT CAGGAACTTT GAGTGTGCAA GGGCAAGCCT CAAGGCCAGC TGCCTATGAA GAAATAAAGA 000240
000241 TAGCCTCCTC CCAGTGGTCT AGGTCTTGTG GTGTCCACTT GATGGACCAG CCAAGACTGC CTGGAATCCC TACTGGACAC 000320
000321 AAACGTTGGT CATCCTATGC TGGAGATTTG AAGTGGTAGG TGGGAGTACC ATAAATCTTC GAAAAGTGTG TCAGGGATTC 000400
000401 TAAGTTGTTT TAGACAGGAT ATGTCAGGTG ATGCCGCAGT AACAACCTCC ACCCCTTCCA AATCTTAGTG ACTTACCAAA 000480
000481 GCCAATTAAT GCCTGTTTCT TATTCTCGCA AAGTTCACGG TGAGTTTGGG TGACTCTCCA GGAGAGCTTT TCCTTGCACA 000560
000561 GCAAATCAAC AATCTGGAAA GCTTCAACCT TATAATACAC ACATGCTTCC ACAGCAGGGA AATGAAGAAT GGAGGATGGT 000640
000641 GACCTGGCTC TTGATTTCTC CTGCCTGAAG TGACACACAT CCCATCTGCT TACATAATGG TGTCCAACTT CAAGTAATCC 000720
000721 TCCCATATTC CCTGAAGGAG GGGCAGATTA GAAATACCAG GGAGAAGTAA TAATATCTGC CTCTAAAAAG AGGGAAGAAC 000800
000801 TTGGCATCTG ACTCAAACTC ACTTTCCGTG TGTCTCGGGT TCACCCCAAA GAAGATGAAA CCTTCTGTTG TTATCTGCTC 000880
000881 TCCACCTGGT GTTTGGGATT AAGGGATGAA CTGCCTTCTA GCAGTTCATC AACTTGGGGA GACAGGGCCA ATTGTTAAAA 000960
000961 AGAGAGAGAT AGAGAAAGAA ATAAATGTAA TTTTAGAACC TGCTTCCTGG ACTTATTGTG AAGATAGAAG TTGAAGCACG 001040
001041 TGACGTTTTT GGCATGTCGC CCAGCAAAAA TCAGAGTTCT ATAAATACAA GCTTTTATGG CCATTTTACA GATGAAGCAA 001120
001121 TCGAGGCTCG TGGTGGTAGA GTGACTCTCA AGGTCACTCA GTGATGATGG TGACCCAAAG ACTGAGTGGC TGCAGAGGCC 001200
001201 TCTGTTAGTC ATATCACCCT TGACCTCATT CATATTCCAC ACACATGAGA ATCCTCTCTT CCTCTTGCAT TGTTCAATCA 001280
001281 GAGTCTACCT GGTTTCCTGA CCTGTTGTGG GCACCATGTC CTGTAATGAA CACTGATGGA TGCTGACGCA AAGGTCAGTT 001360
001361 GGTCTAAAGG TGAGATGCTC TGCCATTTGC TTTCCTCTTC AAACAGATCT GGATCCTAAA AAATACAAGG ATACAGTGAC 001440
001441 TCCTGAGCCC CTCCTGTAGG TAGCAGCCAT TGTCTGATGG TGGCATTTAT CATTTCAGGG TAATGAGGGA AGTGCTTTCC 001520
001521 CATTGCATGA CCAAGATTAT CTTAGGAGTC ATTCGCACTA AGATGTCAAC ATTCTAAGAT TCTGTATCCT ATATTTCTAA 001600
001601 GATTTCCACC ATTCCTTAGC TCTGGGATTC CAAATTCAAC TTCTAAGATT CTAGACCAGG GCTGTCCAAG AGCACTTTCC 001680
001681 ACAACAATGG AAAGATTCTG TATCAATGTT TTCCAGCACA GAAGTGTGGT GGCCACTATC TTCCTGTGGC TATTGAGCAC 001760
001761 TGAAATGTGG TTGGTGTAAA GAAGGAATTG AATTTTAATT TTACTTCATT GTAATTAATT TGAATCTAAG TAGCACACAT 001840
001841 AGCTAGTGGC TACTGTACTA GGAAACAAAA CCATACATCC TCTTCTAATT TTCCTTATCC TCGCAAAGTT CATGGAACAT 001920
001921 GACTGAAGTT CTCAACAGCA CCACAACCCC AGTTTGGGTC ACTTGATCTG GAATTCACTG AATGAAACAT GAGTTTGTTG 002000
002001 TATATCAGTC AGGAGAGAGC AGGTTACACT GCAGTAACAA GCAAGCCTCA GATCTCAGTG CTTATGCTGG ATATTCATCA 002080
002081 CAGGTTGGCA AGAAGATCTC TCATGACAGT TATTTGGTTA CCAAAGCTAA TGGACTAGCA CCCTCTTGAA AGTCACTGCT 002160
002161 CAAAGGGCCT GATGGAAAAC TGAACTGTCA AGGACCTTGC ATTGATTATG AAAGCTACTC AGAATGGACA CATACTACTG 002240
002241 TTTCTGCCTC CAACTTATTG GCCAGAGCTA TTCACCCATC ATGCAGGTAT AGGAAATGCA ACCCAATGTG TTCTGGAAGG 002320
002321 AAAGAAACCC AGAAATATTT GATGATCTGC ACTAATGATT ACATAGTATG CAAGGCTAAA AGCTGGGATA AAAGTAGGAG 002400
002401 GAAAATACTG AGTCTGGGGG AAAAACAAAA CAGCCCGGGA TCCTTGAAAG AGCACTGAGT CCTGGTTTGT CAGATGCTCT 002480
002481 GTGACAGATC CAAGTCCTGG GTTTTTCACA TGCTCTGTGA TCCTCAATAT TTCCCTCATT CTCCTTTGGT CTCTCAGGTT 002560
002561 TACACTTTGA ATTATAATGC CTGATCTAAC CTTGCTGGTT ATAATACACA GACACCTCTG CATGTATGCA AGAATGAAGG 002640
002641 ACCATGGCAT TGTTGGGACT TTTCTAGTTA TTACCCTTCT CTATGCACAA CTGAGGAAGG ACTTTGGGTC CCTGAGTTAG 002720
002721 TGTTGTGGTC TGGGCTGCTA CTTGCCATAC ATTTCCATTA AATTCTTCTT ACCTAGATAA CATTTATTTC ATGGGGGAGA 002800
002801 GAGGGAATGA GTCATAATGT TCTAAACATT TTTTAAAATC TACATTTCTC AGCCTTACTT ACATGTGGGA CTGTCATGTG 002880
002881 GCAACCTCTG TCTAATAACT TGTAAGTGGA AGGTGTTGGG TGCATTTTCC AGAAAAGCTC CTTTACAAAG GAGGCAATTT 002960
002961 GAGCTAACAC TCATGTCTTT ATCACTAGAC TCGCATTTTT CTTCTAGTCT GAATGGGGGA TGTGATGGTT GGAGCTCTGG 003040
003041 CAATCATTCT GAGAGCATTG GAATGCAAGT CACAGTTAAA AAATTTATAT ATGACAGTTA GAAAGAACTT GGATACCTGA 003120
003121 TGGCATTATG GAGCTGCCAT CTGTCCGACT TACAGGAGGA AAAAAATAAT TTCTATCATG CTTGTTTACA CCATTTGTGC 003200
003201 TTGGATATAT GGTTACATGC AACTATTCCT AACATTGCAG AAATTAATTG CTATATTGGT GAACAAGAAG CTACTGTCTT 003280
003281 CAAGGAGTAA TAAGGATAAT ACGAGCATTG GAAATGTGTA GACCCCACTT CCCACTTTAC TACTTGCCAG CTGTGTGACT 003360
003361 TCAGGCAGAG GACTCAGCCT CTCTGAGCTC AAGTTGCCTC ATTTGCAAAG TAGTGGTGAT CATGAGGCTT CCATAGGGTG 003440
003441 TTTGTGTGGA TTCAGTGAGA TCACACACAC AGAGTTCATA GTGTCTGGCA CCTAGCAGAT GCTCAATAAA CAGCAATAAT 003520
003521 ACCTCAAAAA AAAAAAAAAA A
[back to top]

Predicted Small Protein

Name NONHSAT084583_smProtein_3119:3289
Length 57
Molecular weight 6557.406
Aromaticity 0.107142857143
Instability index 78.35375
Isoelectric point 5.09381103516
Runs 9
Runs residual 0.00741608118657
Runs probability 0.0335237197982
Amino acid sequence MALWSCHLSDLQEEKNNFYHACLHHLCLDIWLHATIPNIAEINCYIGEQEATVFKE
Secondary structure LLLHHHLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHLLLLEEEEELL
PRMN -
PiMo -