NONHSAT084656
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084656 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3956 nt |
Genomic location |
chr22+:29196562..29200517 |
Exon number |
1 |
Exons |
29196562..29200517 |
Genome context |
|
Sequence |
000001 AGCCTCGCCG CGCCCGGCCT TTCTACGGTC GTGGCCCTCC GCGATTGGCC AGCGTCGCGT GACGCACGGC CGAGCTCGGC 000080
000081 GTCCATTGGT CCGGCCTGCC CGGCGGGGCG TTTCAGGACC GTGGCTATGG AGTCCGGCGT GGCAGCGGCA ATCCCTGGCC 000160 000161 AAAGGTACTT GGGGTCATTT TCCGCGGGGG GTTACGTGCG GGAGCGTGTC CTCCACAAAC GGATTTTCCC CCCTTAAGCG 000240 000241 GACTTATTTC CATCCGGAGT GACAGAATTT AATTCCAAAC CGAGAGCTTT CCAGACTGAC GAATTTTTAC CGGGACTAAC 000320 000321 AGAGAATTAC CTCAGCCTGA CAACATTTTA TCTCGTGCGC CACTTCGGGA TCCGAGTGGA GCCGAAAGTC GAGATAGAGC 000400 000401 GCAGTTGGGC CTTGGGTTCG AAAAGACTGg acagaggttt cagtgagccg agatcgcgcc actgcacccc ggcctgggcg 000480 000481 acagagcgag actccgtctc aaaaaaagaa aaagaaaaaa GCCTGGAAAG AAATTCTGCG GAATAGAAGT CTTTAAGAAA 000560 000561 TGAGATCGTG CCCTTTAAAA CTAAGTTTAA CAATAGTGAG GGCTTAATAA ACGATAGGTG TTATCTCTGG GTTGGAGGGG 000640 000641 AATACCTTCA ATTTTAGTTT TTCGTTCCAT TTCTAAAGTT TGTACTATGA GCGTGCATTT TTTTAAATTT AGttttattt 000720 000721 tattttttaa atagaaacga ggtctcactg tgttgcccag gctgatctcg aacttctgag ctcaagtgaa cctcccgctt 000800 000801 cggcctcTAT TAtttttatt ttattttttt ttcttatttt ttgagacgga gtcaggctct gtcaccaggc tggagtgcag 000880 000881 tggcgagatc tcagctcact gcaaccttcg cctccgggtt caagcaattc tcctgcctca gcctcccgag tagctgggac 000960 000961 tacaggcgcc cgccaccaca cccggctaat tttttgtagt ttagtagagg cggggtttca ccgtgttggc caggatggtc 001040 001041 tccatctcct gacctcgtga tcgcccgcct cggcctccca aagtgctggg attacaggcg taagccactg cgcccagccT 001120 001121 CTTGTTATTT TAAATGAGGG GACAGGAAAA CGTCACATGT AGAGACTGAG ACCCCGGGGT TGACCCTGAG CCCCCTCTCC 001200 001201 GAGGGGAGGT CGAGGTTCCT GCCTGGCCAT TGTGGCGTGA GGGTGGCCAG GTGTTTGTGA AAGAGGGGCC CCCAGAGAGC 001280 001281 AGCACGGGAG CGATTTATAC ACACGAATAT TAACATGGAG AAGTCCGAGA AACCCCCGTA AATATGCCTG TCCACTTTTT 001360 001361 TTAAAGCAAA TTACAAAATG TGAAATTCCC CAGAAATGCA CAGCAATACC TTCtctaaca agtaattatt gcttcctcct 001440 001441 ctgcgggcag cactattcca ggttctaggg gtgcaaacag tagtaagacT GCTACCTGGT ATTTGGAGGA TATGCAAAAA 001520 001521 GTGAAATGTT AAGATAGCAG GTTCCTAAGT AATTCTTTAG TGTTATTAAG TCGGATTAGC TGGTCAATTT TATTTTGGTA 001600 001601 GGGAGGGAAC AGGATGGGAA AAAGAACTAA AAGCAAGTCC ATCTCTTGAT ATCTAAGCCC TCTAAAGGGA CATAGTTTTG 001680 001681 GTTTTTGCCA GGACTGGGCC ACGAGTCTCC TAACGTGTTT TCTCCCTCTT CGTTGGGAGG GAAATCAATG ATTTTTTTTT 001760 001761 TTTTAACTGG GCTGTCCCAA CTCCAGAGCC TCCTGAGCAC GTGCTGTCCT GTGGGTTGGA AAAGAGGTGG GGGTGATTGG 001840 001841 AGTCTCTGCC GGACCAAGAA ACCAACTTCC TGTTTAACTC TCATCAGCTT GGGCCACCTG GGTTCTGATG TGCCTTCAGA 001920 001921 TGTGGGGAGA CTTACTCCGG GCCTCTGAAA TGTTTTGGGA GAAGTCTGGA GGTGTCTTCT AGCCGAGACC TATAGCTTCA 002000 002001 TATTAAAAGA CCTTGGAAAG CTGTAAGAGG CTGTTAGAAA AGTCATGTCA TGTCATGCCA CCTGTTACGT TTTATTTTTT 002080 002081 GATGCCTTTT TTTTCCtttt tttttttttt gagactgggt ttcgccacgt tgcctaggct ggaactccta ggctcaagcg 002160 002161 atcctcttgc cttggcctcc caaactgctg ggattgcagg caggaaccac agagcccggc cCTTTTTATT TATTAAGTGA 002240 002241 ACATTTATTA ATGCCAAGAG AATGTCTTTC ACTGTGTAAG AAAGAAAATG CTGGAGGACC CTTTTAGTCC AGCAGGGTGT 002320 002321 AGTGAGTAAC TGAGTAGAGA AAGCACAGGG TGCGGGATGG GGAAAAAAGG TTGATGAATT GCACTTTGAT CTTAGTTAAT 002400 002401 GCGATATTGA AATTCACTTC CCCAGCTTGT TTTCAAAACT TTTATATTTT TGACAAACAC TTTAAATCAT ACTAAAAACA 002480 002481 ATAATTTGAC CCACTACAGA TTGCTGTCCA TGCAGTCTTG AACATGTGAG TCCAAACCCT TGGACAGTTT CATATCCTCT 002560 002561 CTATAAAATG AACCTGGTAA TTCTTGCATC AGGTGCCATA AGTGTTTAAA AATATTTACT AGACACCTGT GATAAGAGCT 002640 002641 ATAAAATATA TAAATTACAA AGTTCTCGGT CTTTGAggcc aaacgcggtg gctcacccct gtaatcccag cactttggga 002720 002721 ggccgaggtg ggcagatcac ctgagatcag gagttcgaga ccagcctggc caacatggtg aaacccagtc tctactaaaa 002800 002801 atacaaaaat tagccggaca tggtgggggg cgcctgtaat ctcagctact ggggaggctg aggcaggata atgtcttgaa 002880 002881 cctgggaggc agaggttgca attagccaag attgtgccat tgcactccag cctggtcaac agagtgagac tttctcaaaa 002960 002961 aaaaaaaaaa aaaaaaaaaa aGTcattatt cagaaagaat cagtcaggaa agggtggaca aaacaggaac agaaatAAAT 003040 003041 AGGCATTCca gaaaagggaa aacagaaaaa tactgtacac tggtaagcag aaaacagaaa ataacatggc aggaataagt 003120 003121 ccaaatatat aaataataaa acataaatgt gaatgggtta tattatcttc ttaaTCATGC TGttttgttt tatgtatgtc 003200 003201 tctttataaa caacatatag ctggctttgg ggtttctcag agctctcttt taagaagaga atataaatca tttgtattta 003280 003281 tttttgatta tttatttatt tggacttatt tctgccatgt tatttcacat tttttgttta ctatatttct caaggcagga 003360 003361 ggattgcttg aggccaggag ttcaagacca ggctgggaaa catattgtga ccttgtctct acaaaaaatt taaaaaaatt 003440 003441 aaccaggcgt ggtgacttgc acctgtagtc ccagctgctc ggaagacgga ggtggtaaga tcccttgaac ccaggagttc 003520 003521 gaggctgcag taaactatga gctatgattg aaccattgta ctccaacctg ggagacagaa tgagctcctg cctctaaaaa 003600 003601 acaaaaattt ttttaaaaaa aaggaaaaTG ACTTACCAGC CATTTTTatg tttatggaaa tgtttatgga aagaaagcat 003680 003681 atgtagcaat attaatatga gacagaattt atcataaagg cattaaaagg acaaagaagg gtatttcatg ttgattgaag 003760 003761 gtacaagtta ccatatatac atctttatga acatagcaac ataattttga aatgtatAgg cctagcatgt cggctcacac 003840 003841 ctgtaatctc agcactttgg gaggctgagg tcaggggttc aagaccagcc tggtcaacat ggcgaaaccc cgtctctatt 003920 003921 aaaaatacaa aaattaactg ggcatggtgg cacgtg |
Predicted Small Protein
Name | NONHSAT084656_smProtein_2054:2239 |
Length | 62 |
Molecular weight | 6941.1725 |
Aromaticity | 0.196721311475 |
Instability index | 56.6378688525 |
Isoelectric point | 11.4353637695 |
Runs | 11 |
Runs residual | 0.0275108347466 |
Runs probability | 0.0611681199917 |
Amino acid sequence | MPPVTFYFLMPFFSFFFFLRLGFATLPRLELLGSSDPLALASQTAGIAGRNHRARPFLFI K |
Secondary structure | LLLEEEEELLLHHHHHHHHHHLLLLLLHHHHLLLLLHHHHHHHHHHHLLLLLLLLLEEEE L |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL L |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii i |