NONHSAT084656

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT084656

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3956 nt

Genomic location

chr22+:29196562..29200517

Exon number

1

Exons

29196562..29200517

Genome context

Sequence
000001 AGCCTCGCCG CGCCCGGCCT TTCTACGGTC GTGGCCCTCC GCGATTGGCC AGCGTCGCGT GACGCACGGC CGAGCTCGGC 000080
000081 GTCCATTGGT CCGGCCTGCC CGGCGGGGCG TTTCAGGACC GTGGCTATGG AGTCCGGCGT GGCAGCGGCA ATCCCTGGCC 000160
000161 AAAGGTACTT GGGGTCATTT TCCGCGGGGG GTTACGTGCG GGAGCGTGTC CTCCACAAAC GGATTTTCCC CCCTTAAGCG 000240
000241 GACTTATTTC CATCCGGAGT GACAGAATTT AATTCCAAAC CGAGAGCTTT CCAGACTGAC GAATTTTTAC CGGGACTAAC 000320
000321 AGAGAATTAC CTCAGCCTGA CAACATTTTA TCTCGTGCGC CACTTCGGGA TCCGAGTGGA GCCGAAAGTC GAGATAGAGC 000400
000401 GCAGTTGGGC CTTGGGTTCG AAAAGACTGg acagaggttt cagtgagccg agatcgcgcc actgcacccc ggcctgggcg 000480
000481 acagagcgag actccgtctc aaaaaaagaa aaagaaaaaa GCCTGGAAAG AAATTCTGCG GAATAGAAGT CTTTAAGAAA 000560
000561 TGAGATCGTG CCCTTTAAAA CTAAGTTTAA CAATAGTGAG GGCTTAATAA ACGATAGGTG TTATCTCTGG GTTGGAGGGG 000640
000641 AATACCTTCA ATTTTAGTTT TTCGTTCCAT TTCTAAAGTT TGTACTATGA GCGTGCATTT TTTTAAATTT AGttttattt 000720
000721 tattttttaa atagaaacga ggtctcactg tgttgcccag gctgatctcg aacttctgag ctcaagtgaa cctcccgctt 000800
000801 cggcctcTAT TAtttttatt ttattttttt ttcttatttt ttgagacgga gtcaggctct gtcaccaggc tggagtgcag 000880
000881 tggcgagatc tcagctcact gcaaccttcg cctccgggtt caagcaattc tcctgcctca gcctcccgag tagctgggac 000960
000961 tacaggcgcc cgccaccaca cccggctaat tttttgtagt ttagtagagg cggggtttca ccgtgttggc caggatggtc 001040
001041 tccatctcct gacctcgtga tcgcccgcct cggcctccca aagtgctggg attacaggcg taagccactg cgcccagccT 001120
001121 CTTGTTATTT TAAATGAGGG GACAGGAAAA CGTCACATGT AGAGACTGAG ACCCCGGGGT TGACCCTGAG CCCCCTCTCC 001200
001201 GAGGGGAGGT CGAGGTTCCT GCCTGGCCAT TGTGGCGTGA GGGTGGCCAG GTGTTTGTGA AAGAGGGGCC CCCAGAGAGC 001280
001281 AGCACGGGAG CGATTTATAC ACACGAATAT TAACATGGAG AAGTCCGAGA AACCCCCGTA AATATGCCTG TCCACTTTTT 001360
001361 TTAAAGCAAA TTACAAAATG TGAAATTCCC CAGAAATGCA CAGCAATACC TTCtctaaca agtaattatt gcttcctcct 001440
001441 ctgcgggcag cactattcca ggttctaggg gtgcaaacag tagtaagacT GCTACCTGGT ATTTGGAGGA TATGCAAAAA 001520
001521 GTGAAATGTT AAGATAGCAG GTTCCTAAGT AATTCTTTAG TGTTATTAAG TCGGATTAGC TGGTCAATTT TATTTTGGTA 001600
001601 GGGAGGGAAC AGGATGGGAA AAAGAACTAA AAGCAAGTCC ATCTCTTGAT ATCTAAGCCC TCTAAAGGGA CATAGTTTTG 001680
001681 GTTTTTGCCA GGACTGGGCC ACGAGTCTCC TAACGTGTTT TCTCCCTCTT CGTTGGGAGG GAAATCAATG ATTTTTTTTT 001760
001761 TTTTAACTGG GCTGTCCCAA CTCCAGAGCC TCCTGAGCAC GTGCTGTCCT GTGGGTTGGA AAAGAGGTGG GGGTGATTGG 001840
001841 AGTCTCTGCC GGACCAAGAA ACCAACTTCC TGTTTAACTC TCATCAGCTT GGGCCACCTG GGTTCTGATG TGCCTTCAGA 001920
001921 TGTGGGGAGA CTTACTCCGG GCCTCTGAAA TGTTTTGGGA GAAGTCTGGA GGTGTCTTCT AGCCGAGACC TATAGCTTCA 002000
002001 TATTAAAAGA CCTTGGAAAG CTGTAAGAGG CTGTTAGAAA AGTCATGTCA TGTCATGCCA CCTGTTACGT TTTATTTTTT 002080
002081 GATGCCTTTT TTTTCCtttt tttttttttt gagactgggt ttcgccacgt tgcctaggct ggaactccta ggctcaagcg 002160
002161 atcctcttgc cttggcctcc caaactgctg ggattgcagg caggaaccac agagcccggc cCTTTTTATT TATTAAGTGA 002240
002241 ACATTTATTA ATGCCAAGAG AATGTCTTTC ACTGTGTAAG AAAGAAAATG CTGGAGGACC CTTTTAGTCC AGCAGGGTGT 002320
002321 AGTGAGTAAC TGAGTAGAGA AAGCACAGGG TGCGGGATGG GGAAAAAAGG TTGATGAATT GCACTTTGAT CTTAGTTAAT 002400
002401 GCGATATTGA AATTCACTTC CCCAGCTTGT TTTCAAAACT TTTATATTTT TGACAAACAC TTTAAATCAT ACTAAAAACA 002480
002481 ATAATTTGAC CCACTACAGA TTGCTGTCCA TGCAGTCTTG AACATGTGAG TCCAAACCCT TGGACAGTTT CATATCCTCT 002560
002561 CTATAAAATG AACCTGGTAA TTCTTGCATC AGGTGCCATA AGTGTTTAAA AATATTTACT AGACACCTGT GATAAGAGCT 002640
002641 ATAAAATATA TAAATTACAA AGTTCTCGGT CTTTGAggcc aaacgcggtg gctcacccct gtaatcccag cactttggga 002720
002721 ggccgaggtg ggcagatcac ctgagatcag gagttcgaga ccagcctggc caacatggtg aaacccagtc tctactaaaa 002800
002801 atacaaaaat tagccggaca tggtgggggg cgcctgtaat ctcagctact ggggaggctg aggcaggata atgtcttgaa 002880
002881 cctgggaggc agaggttgca attagccaag attgtgccat tgcactccag cctggtcaac agagtgagac tttctcaaaa 002960
002961 aaaaaaaaaa aaaaaaaaaa aGTcattatt cagaaagaat cagtcaggaa agggtggaca aaacaggaac agaaatAAAT 003040
003041 AGGCATTCca gaaaagggaa aacagaaaaa tactgtacac tggtaagcag aaaacagaaa ataacatggc aggaataagt 003120
003121 ccaaatatat aaataataaa acataaatgt gaatgggtta tattatcttc ttaaTCATGC TGttttgttt tatgtatgtc 003200
003201 tctttataaa caacatatag ctggctttgg ggtttctcag agctctcttt taagaagaga atataaatca tttgtattta 003280
003281 tttttgatta tttatttatt tggacttatt tctgccatgt tatttcacat tttttgttta ctatatttct caaggcagga 003360
003361 ggattgcttg aggccaggag ttcaagacca ggctgggaaa catattgtga ccttgtctct acaaaaaatt taaaaaaatt 003440
003441 aaccaggcgt ggtgacttgc acctgtagtc ccagctgctc ggaagacgga ggtggtaaga tcccttgaac ccaggagttc 003520
003521 gaggctgcag taaactatga gctatgattg aaccattgta ctccaacctg ggagacagaa tgagctcctg cctctaaaaa 003600
003601 acaaaaattt ttttaaaaaa aaggaaaaTG ACTTACCAGC CATTTTTatg tttatggaaa tgtttatgga aagaaagcat 003680
003681 atgtagcaat attaatatga gacagaattt atcataaagg cattaaaagg acaaagaagg gtatttcatg ttgattgaag 003760
003761 gtacaagtta ccatatatac atctttatga acatagcaac ataattttga aatgtatAgg cctagcatgt cggctcacac 003840
003841 ctgtaatctc agcactttgg gaggctgagg tcaggggttc aagaccagcc tggtcaacat ggcgaaaccc cgtctctatt 003920
003921 aaaaatacaa aaattaactg ggcatggtgg cacgtg
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Predicted Small Protein

Name NONHSAT084656_smProtein_2054:2239
Length 62
Molecular weight 6941.1725
Aromaticity 0.196721311475
Instability index 56.6378688525
Isoelectric point 11.4353637695
Runs 11
Runs residual 0.0275108347466
Runs probability 0.0611681199917
Amino acid sequence MPPVTFYFLMPFFSFFFFLRLGFATLPRLELLGSSDPLALASQTAGIAGRNHRARPFLFI
K
Secondary structure LLLEEEEELLLHHHHHHHHHHLLLLLLHHHHLLLLLHHHHHHHHHHHLLLLLLLLLEEEE
L
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
L
PiMo oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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