NONHSAT084681
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084681 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2036 nt |
Genomic location |
chr22+:29627671..29629851 |
Exon number |
2 |
Exons |
29627671..29629457,29629603..29629851 |
Genome context |
|
Sequence |
000001 GGTGAGTGCC CGCAATGCTG CCCCACAGCT CCTCTGGCCA TCCCCTCCAC CAGGTGGGCC CTTCCCTGCT CCTGACATGG 000080
000081 CCAGGATGAC CTGGGCCCTT TCATCTACTT GCCTCTTCAC TCAGCACCCC ACCACGGAGT GCCCTGCCCA CGCCTGGGCT 000160 000161 CCATGAAGTC CTCTCTTATG ttcactgacc cacattccct gggcacctac acttatcagg ctctgagctg ggcactgggt 000240 000241 ggggtcagac atgtccctgc ccttctggag cttccatgct gctgggagca gggctgggca gaggagaagc agcaatgctt 000320 000321 gccccatgtg accagggttt ctatgagggg ttttgggggt ttgggagccc caaggaagga agactcagcc tggacgaggt 000400 000401 ggagaactAG GTGCTGTGCT CATCCCCCTG TTAGACTACC AGGCAGCCTA GGCCTGTGGA CTCCGGGGCC CTCTCTCATG 000480 000481 CCCACTGCTC CAGGCTGCCT TGTCCTGTCG CTCAAGGCCA CCCTGGGCCT CCTTGCCTCC TGTATACCCA CAAATCCGTG 000560 000561 TGATTCCATT GCAGGTCCAC AGGGCCCCCC AGGGAGCCCT GGCCGGGCTG GAGCTGTGGG CACCCCTGGA GAGAGGGGAC 000640 000641 CTCCTGGGCC ACCAGGGCCT CCTGGCCCCC CTGGGCCCCC AGCCCCTGTT GGGCCACCCC ATGCCCGGAT CTCCCAGCAT 000720 000721 GGTGAGTCCC CCTGGGATCC CAGCAGGTGG AGGTGGGGGT GGAGTAGCCA TCAGCACAGT GCCCgctacc atctgccacg 000800 000801 tgccttctgt gtgccagccc tgctcacgat aggccacatg tgacccagtc ctccagcagg cgccgttgtc ctcctgtggt 000880 000881 tacaggtgag gaacactgag gaccagagag ggaaggtggc ttgccagggt cccacagcct gggcgtaggg gaacggcttc 000960 000961 aaacccaggc tgcctccaga acctgtgctT AGAGCCACCG GGCATCAGGC CCTCCCAAGC CTTGGAACTG GCTGGAATCC 001040 001041 AGTTCTCGGA ACACTGGGAC GCAAAAGACC CGGCGGCAGG AAGTGAGTCC TGAACTCCCA AGGCCACAGG CCCGGCCCCT 001120 001121 CCTCCAGGCC CTGACGTGCG TCCTTGGCTT CTTCCCTTTG GCAGCCCAGC CTGACCTGCC CATGGGCTGC CAGGGGTCAG 001200 001201 AGTGTGGAGC GCCAGGTTTC AGCCTCTTCT CCACTGTGTT TTTGGTGCAC AACCCAGCAC ACCATTCATT CATTCTGCCA 001280 001281 TCCCAGCATT CATtccatct cactatccat acgatgggga caatgacagt gccagcctcc cagagctgcg taacatccat 001360 001361 gtacagaagc ctggcacaca gtaggtggtg gataaatggt atcttttatt gtcattccca tttgacaggt gacagtacag 001440 001441 gctctgaaaa gtagaaagtg ttgctggatg tcaccagctg gattgcagtg gggttagaac ccacatctcc ctgcctcctg 001520 001521 gtcTTGCGGG ACCAACACTC TCCACACTCC TCACCCTGGA GCAGGTGCCC AGGTGGTACC AGCCATGCTG CAGGCTGCCC 001600 001601 CATAGGGCAG TCCAAGCTGT CTTGGCAGAG GTGGCAGGTG AAGACTAACC ACCCCACTCT ACCCAGCTCT ACTCACTCAT 001680 001681 CATCTTTGCT CACCCAGGAG ACCCATTGCT GTCCAACACC TTCACTGAGA CCAACAACCA CTGGCCCCAG GGACCCACTG 001760 001761 GGCCTCCAGG CCCTCCAGGG CCCATGGGTC CCCCTGGGCC TCCTGGCCCC ACAGGTGTCC CTGGGAGTCC TGGTCACATA 001840 001841 GTGAGTAGTT CTCCTTGTAC TCTCACCCAT GTGTCTGtcc atctttccat ctatgcatac atccatacat ctgtccatca 001920 001921 tccacccttg tatccatcta tccatccatc cattcatcct tccattcatt cattcaacaa gtatttattg agcacttaat 002000 002001 atgCAAACTA CCTTCCATAA ATCTTATTCA ATCCAA |
Predicted Small Protein
Name | NONHSAT084681_smProtein_1181:1453 |
Length | 91 |
Molecular weight | 9883.0817 |
Aromaticity | 0.111111111111 |
Instability index | 61.9712222222 |
Isoelectric point | 7.11444091797 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0399698340875 |
Amino acid sequence | MGCQGSECGAPGFSLFSTVFLVHNPAHHSFILPSQHSFHLTIHTMGTMTVPASQSCVTSM YRSLAHSRWWINGIFYCHSHLTGDSTGSEK |
Secondary structure | LLLLLLLLLLLLEEEEEEEEEEELLLLLEEEELLLLEEEEEEEELLEEEELLLLHHHHHH HHHHHHHHHHHHLEEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |