NONHSAT084691
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084691 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2630 nt |
Genomic location |
chr22+:29686819..29696515 |
Exon number |
8 |
Exons |
29686819..29688158,29688477..29688595,29692229..29692358,29693817..29693939,29694723..29694885,29695224..29695321,29695589..29695841,29696112..29696515 |
Genome context |
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Sequence |
000001 TTTAAAGAAA ACAAAATCTA ACCCAAAAAG TCCAATTCAT ATTTCCCTCT CCCCTCTTTA AGTAATTTTA CATGGCCATA 000080
000081 GTCATTATTC TAACTGATAT GTCTATAAAG TTGCACCCCC AGTCCGTTGA GCCTTGGTAT TTGTTGTAAA TTCTCCTTTC 000160 000161 ACAGCGATTG TTAAATCTAT TCGTGCCCTG AGATGTATGG CTTTATGCTG AAGATTGGCT GGATGCGTCC TCTGATGTGT 000240 000241 GTTGTAGGAA TTTAATGTGG TTGTCTCCTG CTTTTATTAT ACTGTGACTT GTTAGGAAAC CCTGGGCCTC ATTTGGCTCT 000320 000321 CCCTTGGGAG AGGTTGAGGG TGCACCTTTA TGAACATGGA AAGGTTTATC ACAGCAGTTA ACCCCCACTT GCTCCTCCCC 000400 000401 TCTATACCAA GCTCTTCTGG TTTTTCACCT GACGGGGTGG GTGTTTGGGA TCTATTTTTT CTTGCTAATT TGCCAAGTAT 000480 000481 TGCACTATTA ATACCAGCCC CCGAAATGAA AGGAACCAAC CACACTGGTG TGTACAATCA GACAAGCAAG GTTGTATATT 000560 000561 GAGGAAATTT GAGCAAGCTG CCCTGAAGAA AGGCATAGTG ACAAGATGAG AGAGATGCAT TGTTTGGAGA TGTGTTTAGC 000640 000641 CAGTGCCCTT CTTCCCCACG AGCCCCCCCA AGGCTCAGAG CGGTACTGGC TTTTAAAGGG AAAGGCCTTC ATTTCTTCGT 000720 000721 TTATCCCCCC AGCAGCGCTG GAGAGCGAGG TGGCTTCAAT AAGCCTGGTG GTAAGTTTTT GAGTATTACC ATAGATAGTG 000800 000801 TTTAAAAAAA AATGCAGTCA GTTTTTAGAA AACTATAATT TTTTTATTAG TTTCATAAGT GGTTTAAAAA TGATCTATAC 000880 000881 AAAAGAGACT AATGGGTACT GCCGGCATTG TCTTAGGGGT TAATAAGGTT AACCTATGGT TACAAAACAA AGGGTAACTT 000960 000961 GAAGTATTGA GTAACTGCTT CTGTAATATG GGGGAGAATA AATTTTTAAA TTTGGTTTAT TTAGAGGAAA AATTTTGACT 001040 001041 TAAATTTAAC ACTGATTTGG CACATAAGCA TTGAGAGTGT ATTTGGTTAA TGGTTTAGAA GCAAACCAGC AAAGGAAAAA 001120 001121 AGCAAACCCT AGCAAACCTT TCACAAATGT TAAAGAGACA CTGCTCCATT TTAGCAGTGC GGGTCATTTT GAGTTTAATG 001200 001201 AATCCCCATC AAATGGTGGT ATAGTAGATA GCTATGTGTG TTTGTAAGGT TTGTAGCTTG CAAGACGTGC ACTAATAATA 001280 001281 TTTTATATGA TCTTTCCTGG TTGGCAGGAC CCATGGATGA AGGACCAGAT CTTGATCTAG GCCCACCTGT AGATCCAGAT 001360 001361 GAAGACTCTG ACAACAGTGC AATTTATGTA CAAGGATTAA ATGACAGTGT GACTCTAGAT GATCTGGCAG ACTTCTTTAA 001440 001441 GCAGTGTGGG GTTGTTAAGA TGAACAAGAG AACTGGGCAA CCCATGATCC ACATCTACCT GGACAAGGAA ACAGGAAAGC 001520 001521 CCAAAGGCGA TGCCACAGTG TCCTATGAAG ACCCACCCAC TGCCAAGGCT GCCGTGGAAT GGTTTGATGG GAAAGATTTT 001600 001601 CAAGGGAGCA AACTTAAAGT CTCCCTTGCT CGGAAGAAGC CTCCAATGAA CAGTATGCGG GGTGGTCTGC CACCCCGTGA 001680 001681 GGGCAGAGGC ATGCCACCAC CACTCCGTGG AGGTCCAGGA GGCCCAGGAG GTCCTGGGGG ACCCATGGGT CGCATGGGAG 001760 001761 GCCGTGGAGG AGATAGAGGA GGCTTCCCTC CAAGAGGACC CCGGGGTTCC CGAGGGAACC CCTCTGGAGG AGGAAACGTC 001840 001841 CAGCACCGAG CTGGAGACTG GCAGTGTCCC AATCCGGGTT GTGGAAACCA GAACTTCGCC TGGAGAACAG AGTGCAACCA 001920 001921 GTGTAAGGCC CCAAAGCCTG AAGGCTTCCT CCCGCCACCC TTTCCGCCCC CGGGTGGTGA TCGTGGCAGA GGTGGCCCTG 002000 002001 GTGGCATGCG GGGAGGAAGA GGTGGCCTCA TGGATCGTGG TGGTCCCGGT GGAATGTTCA GAGGTGGCCG TGGTGGAGAC 002080 002081 AGAGGTGGCT TCCGTGGTGG CCGGGGCATG GACCGAGGTG GCTTTGGTGG AGGAAGACGA GGTGGCCCTG GGGGGCCCCC 002160 002161 TGGACCTTTG ATGGAACAGA TGGGAGGAAG AAGAGGAGGA CGTGGAGGAC CTGGAAAAAT GGATAAAGGC GAGCACCGTC 002240 002241 AGGAGCGCAG AGATCGGCCC TACTAGATGC AGAGACCCCG CAGAGCTGCA TTGACTACCA GATTTATTTT TTAAACCAGA 002320 002321 AAATGTTTTA AATTTATAAT TCCATATTTA TAATGTTGGC CACAACATTA TGATTATTCC TTGTCTGTAC TTTAGTATTT 002400 002401 TTCACCATTT GTGAAGAAAC ATTAAAACAA GTTAAATGGT AGTGTGCGGA GTTTTTTTTT CTTCCTTCTT TTAAAAATGG 002480 002481 TTGTTTAAGA CTTTAACAAT GGGAACCCCT TGTGAGCATG CTCAGTATCA TTGTGGAGAA CCAAGAGGGC CTCTTAACTG 002560 002561 TAACAATGTT CATGGTTGTG ATGttttttt ttttttttta aataaaattC CAAATGTTTA TAAAGAGTCA |
Predicted Small Protein
Name | NONHSAT084691_smProtein_605:781 |
Length | 59 |
Molecular weight | 6419.4924 |
Aromaticity | 0.0862068965517 |
Instability index | 52.4034482759 |
Isoelectric point | 5.48663330078 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0651908593085 |
Amino acid sequence | MREMHCLEMCLASALLPHEPPQGSERYWLLKGKAFISSFIPPAALESEVASISLVVSF |
Secondary structure | LLLHHHHHHHHHHHHLLLLLLLLLHHHHHHHLLLEEELLLLHHHHHLLLLEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo |