NONHSAT084693
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084693 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2301 nt |
Genomic location |
chr22+:29691515..29696326 |
Exon number |
4 |
Exons |
29691515..29692358,29693817..29693939,29694723..29695841,29696112..29696326 |
Genome context |
|
Sequence |
000001 GTTTTTAGGG TATCACGTTC CTTTTTTTAA GTCAGAGGTA TCAATATATA TATCCTGTTG TAATCTTTTT TAAGTCCTAT 000080
000081 AAATAGATTG CTCTTGTGTT ACTGGATATA TGTAAACAAT TACAGACTAA ACTGATCGTG TGCATATATA ATGCAAAAAA 000160 000161 GTACACGtga agatattctt atacaaggta gctcctgaat tcaagtcaac cacatctgat attcagctga aagactagtc 000240 000241 atctgttcta actggaggaa gtagtggctg tgttagacta accaagaatc cctgtagttc actcacagcc tgtacactgt 000320 000321 ccttcacggt ttaaggataa ttttctttat gccagtcatg tcttatgtgg tggtatcaaa gtctgactac cCCTACGAGG 000400 000401 TGGCTGTGCT CAGTGGATAC CTGTCTGGGC ATAGAAAATG CCAGGGCAGG CAAACCAGCA TCAGAAGATG GCTAAGGCAG 000480 000481 GAGTGGGGCC TATCCTGTTC ACTTCCACAC TTTGGTCTAC TTTGGTTTTT ATGATAAAGC AGGGATAGAG GAGAAAATAA 000560 000561 CTTAGAATTC TGAAAAACTT AAAAGCGGAG AAACGGTGAC ATTTAGTGAC TTACTACATG TGAGAAATTG GTACTTTTCC 000640 000641 TGGATTTTGC CTGGACTTTT TTCTCCCAAA TTAGTATATT CTAGTCATGC CTAACTATGC TATTCTTTGT CTAGATGAAC 000720 000721 AAGAGAACTG GGCAACCCAT GATCCACATC TACCTGGACA AGGAAACAGG AAAGCCCAAA GGCGATGCCA CAGTGTCCTA 000800 000801 TGAAGACCCA CCCACTGCCA AGGCTGCCGT GGAATGGTTT GATGGGAAAG ATTTTCAAGG GAGCAAACTT AAAGTCTCCC 000880 000881 TTGCTCGGAA GAAGCCTCCA ATGAACAGTA TGCGGGGTGG TCTGCCACCC CGTGAGGGCA GAGGCATGCC ACCACCACTC 000960 000961 CGTGGAGGTC CAGGAGGCCC AGGAGGTCCT GGGGGACCCA TGGGTCGCAT GGGAGGCCGT GGAGGAGATA GAGGAGGCTT 001040 001041 CCCTCCAAGA GGACCCCGGG GTTCCCGAGG GAACCCCTCT GGAGGAGGAA ACGTCCAGCA CCGAGCTGGA GACTGGCAGT 001120 001121 GTCCCAATCC GTATGTACTT GTCTTGGCAA ATTGATACCC TACGAGTGAA GCCACCCTTC CCTCACCCCA TCCCCACTCT 001200 001201 AGAGTGGATT GCTCTGTCTA GAGGAACAGA ATGATGACCC TGATGGCTGG TTAGGGACAC TAGTCAGCCA TTCACTGGAC 001280 001281 GCTTCAGAGC CTTCTGAAGA TTGATTTGAC CTGTCCTGTG GGTGCAATGC TGCCTGAGGC TGTGCCCTAA AGCATGGGTG 001360 001361 TACATAGATC CTCTTGATAG TGAGTGTGTA CCTGTTCACA CACCACCTTT CCTTGTTTAT CTTCCTTAGT TCAATTGGTG 001440 001441 ATTTCTGCTG TGATGTAATT GTATGCAGGG GTTGTGGAAA CCAGAACTTC GCCTGGAGAA CAGAGTGCAA CCAGTGTAAG 001520 001521 GCCCCAAAGC CTGAAGGCTT CCTCCCGCCA CCCTTTCCGC CCCCGGGTAG GTGCAGGTTT CATGAGTGTC CCCTCAGCTT 001600 001601 CCTGGTGCTA AACCTCTTTT CTTATTTGTG GGCTTGGTAA ACTGCAGTTG CCCTCTGCTT AACAACTTTG AGTTGTCGTG 001680 001681 TCCTCATTTC TAAATTGTCA GCCCGATGCC GAGATTGAGT GAAGTGTCTG GTTTGTTCTG CTGTGAGAGA AGGAAGCAGA 001760 001761 GCAGCTTCCA CAGTGTCCAC AGGGCCTCTG CAGCCACCCA CTGACTGCTT TCGCCCTGCT ATTCTCACCT TAGGTGGTGA 001840 001841 TCGTGGCAGA GGTGGCCCTG GTGGCATGCG GGGAGGAAGA GGTGGCCTCA TGGATCGTGG TGGTCCCGGT GGAATGTTCA 001920 001921 GAGGTGGCCG TGGTGGAGAC AGAGGTGGCT TCCGTGGTGG CCGGGGCATG GACCGAGGTG GCTTTGGTGG AGGAAGACGA 002000 002001 GGTGGCCCTG GGGGGCCCCC TGGACCTTTG ATGGAACAGA TGGGAGGAAG AAGAGGAGGA CGTGGAGGAC CTGGAAAAAT 002080 002081 GGATAAAGGC GAGCACCGTC AGGAGCGCAG AGATCGGCCC TACTAGATGC AGAGACCCCG CAGAGCTGCA TTGACTACCA 002160 002161 GATTTATTTT TTAAACCAGA AAATGTTTTA AATTTATAAT TCCATATTTA TAATGTTGGC CACAACATTA TGATTATTCC 002240 002241 TTGTCTGTAC TTTAGTATTT TTCACCATTT GTGAAGAAAC ATTAAAACAA GTTAAATGGT A |
Predicted Small Protein
Name | NONHSAT084693_smProtein_1865:2125 |
Length | 87 |
Molecular weight | 8867.8629 |
Aromaticity | 0.046511627907 |
Instability index | 46.8662790698 |
Isoelectric point | 11.9066772461 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0403050108933 |
Amino acid sequence | MRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMG GRRGGRGGPGKMDKGEHRQERRDRPY |
Secondary structure | LLLLLEEELLLLLLLLLEELLLLLLLLLLLLLEELLLLLLLLLLLLLLLLLLLHHHLLLL LLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |