NONHSAT084806
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084806 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1558 nt |
Genomic location |
chr22+:31102651..31110330 |
Exon number |
3 |
Exons |
31102651..31102708,31103313..31103724,31109243..31110330 |
Genome context |
|
Sequence |
000001 GGTCCTGCCT CTCTTTTCCC TATCACTCAT CTTCTTCCAG CCTTGACCCT TCTTCTAAAC CTCAAGTGAT CCACCCACCT 000080
000081 TGACCTCCCA AAGTGTTAGG ATTACAGGCG TGAGCCACCG TGCCCGGCCT TAAGTGAAGC ATTTTTATAG AAAATGTACT 000160 000161 TTTTGGGCCC AGTGCAGTGG CTCACACCGG TAATCCCAGC ACTGTGGGAG GCTGAGGCGG GCGGATCACG AGGTCAGAAG 000240 000241 ATCGAGACCA TCCTGGCTAA CACAGTGAAA CCCCGTCTCT ACTAAAAATA CACAAAAAAA ATTAGCCGGG CACGGTGGCG 000320 000321 GGCCCTGTAG TCCCAGCTAC TCGGGAGGCT GAGGCAGAGG AATGGCGTGA ACCCGGGTGG CGGAGCTTGC AGTGAGTCGA 000400 000401 GATCATGCCA CTGCACTCCA GCCTGGGCAA CAGAGCGAGA CTCTGTCTCA AAAAAAAAAA AAAGAAAATG TTTTTAGTAG 000480 000481 AGACAGGGTT TCACCGTGTT AGCCAGGATG GTCTTGATCT CCTGACCTCG TGATCTGCCC TCAGCCTCCC AAAGTGCTGG 000560 000561 GATTACAGGC GTGAGCCACT GCACCCAGCT CATTTTATTT TATTTTTATG ATTTTTTTCT TTTCTTCCTA ACATGGGTTG 000640 000641 GGAACCAATG AAGTATTTTA TTTTATTTTT AAAATGTTAT TTATTTATTT ATTTAGACAG GGTCTTGCTC TGTTACCCAG 000720 000721 GCTAGAGTGC AGTGGCATGA TTACAGCTCA TTGCAGCCTC AACCTCCCAG GCTCAAGTGA TCCTCCCACC TCAGCCTCCC 000800 000801 AAGTAGGTGG GACTACAGAT GCACACCACT ATGCTTGGCT AAGTTTTAAA CAATTATTTT AGATACAGGG TCTTGCTATG 000880 000881 TTGCCCAGGC TGGTCTCTAA CTCCTGGGCT CAAGTGATCC TCCCATCTTG GCCTCCCAAA ATACTGAGAT TACAGATGTG 000960 000961 AGCTATTACA GTCAACCTAA AATTGTTTTC ATTGACACAT CATAATTATA TGTATTTTTG GGGTACAGGG TGATATTTTG 001040 001041 GCTCATGTAT ACCACGTGTA ATGATCAAAT CAAAGTAACT AGCATATCCA TCACCTCAAA CATTTATCAT TTCTTTGTGT 001120 001121 TGGGAACATC CAAACTCCTG TCTTCCGGTT ATTTGAAAAT ATACAATACA TTATTATTAA CTGTAGTCAC CCTACAGTGC 001200 001201 TGTAGAACAC TAGAACTTAT TCCTCCTGTC TAGCTGTAGT TCTGTATCCA TTAACCAACC TCTCCTTCTC CCCCACTTCC 001280 001281 CTCTATCCTT CCCAGCCTCT AATAACTACT ATGCTACTCT CTACTTTTAT GAGATTGACT TTTTCAGCCT CCACATGTGA 001360 001361 GTGAGAACAT GTGGTATTTG TCTTTCATGC TTGGCTTGTT TTACTTAACA TAATGTTCTC TGGGCTCATG CATGTTGTGC 001440 001441 ACATACAAGA TTTCATTCTT TTTTAATGGC TGAATAGTAT TCCATTGTGT ATATATACCA CATTTTCTTT ATCCATTCAT 001520 001521 CTGCTGGACA CTTAGGCGGA TTCCATATCT TGGCTATT |
Predicted Small Protein
Name | NONHSAT084806_smProtein_404:532 |
Length | 43 |
Molecular weight | 4784.6747 |
Aromaticity | 0.047619047619 |
Instability index | 40.2642857143 |
Isoelectric point | 10.2977905273 |
Runs | 9 |
Runs residual | 0.038125376733 |
Runs probability | 0.0426406798956 |
Amino acid sequence | MPLHSSLGNRARLCLKKKKKKMFLVETGFHRVSQDGLDLLTS |
Secondary structure | LLLLLLLLHHHHHHHHHLLLLEEEEELLLEEELLLLHHHLLL |
PRMN | - |
PiMo | - |