NONHSAT085002
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT085002 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1903 nt |
Genomic location |
chr22-:33814788..33816593 |
Exon number |
1 |
Exons |
33814788..33816593 |
Genome context |
|
Sequence |
000001 TTTTTTGATG TCGTTTCCTG GAAGTGTTCC CCACACTCGC TCCACTCCAG CCACTCTGGC TTCCTTGCTG CTCTTTGAAC 000080
000081 ACACCTATTT AAATGTGAGC CTCTCTGCCT CCAAACTACA GCCTCCATGC TATTCCGTTT TCCACCTTAT TCTCCTCCAG 000160 000161 CACTTTTAAG TACCATCTGA CCAACTACAG TTTGGTTCAT TTTCTTTTAA TTTCCCTGTG TCTTTCCATG AGGATATAAG 000240 000241 TTCCTCAAAG GTAGTAATTT TTTTCTGTCA ATTTCACTGC TGTCTATGGC CATACCACCC TGAATGCACC CAATCTCATC 000320 000321 TGAATTTCAC TGCTTTATCC CCCATACCTG GAATCATGCC TGGCCTGTAT TAGGCACTAA GTATTTGTTG TTGAATAAAA 000400 000401 TAAATAATTT TGGAAGATAA GTGTTTCGAA GACAGTGATA TAGAGCAGCA TTTCTCATGG TTGCTCGTGG GAAATTTTAC 000480 000481 AACCCATGGG ACACCGGCAA TGTCTGGAGA CATTTTTCTT GTCACAGCCA GGAGGTTCTA CGGGCACTTA GTGGGTAGAG 000560 000561 GCCAGGGATG CCACTAGTAC ACCAGACAGT CCCCCCATAA CAAAGATTCA TCTGGGTCAG GTGCAGTGGC TCATGCCTAT 000640 000641 AATCTCAGCA CTTTGGGAGG CCAAAGTGAG TGGATCACTT GAGGTCAGGA GTTCGAGACC AGCCTGGCCA ACATGGTGAA 000720 000721 ACCCCACCTC TACTATAAAC ACAAAAATTA GCTGGGTGTG ATGGTGGTAG GCGCCTGTAA TCCCAGCTAT TTGGGAGGCT 000800 000801 GAGGCACGAG AATCGCTCGG ACCCAGGAGG CAGAGGCTGC AGTGAGCTGA GATCGTGCCA CTACACTTCA GCCTGGGCAA 000880 000881 TAGAGCGAGA CTCCATCTCA AAACAAACAA ACAAAAAACA ACAACAACAA CAACAAAAAC AAAGATTCAT CTGGCCACAA 000960 000961 ATACCACTAG TGGAACCCTA ACAGAAAAGC AAGTTTTGAG GGAATTGGAT TCTTCTAGAA AGGACCGTTT CTTTGGGTAG 001040 001041 AGTCTCTGAG AAGACGACAT TTGAGCTAAG ACCTGAAGGA TGGAAAGGCG GCAGCCATGC TGAGAGCTGG AATGAGCATC 001120 001121 CCAGATAGAG AGGACGGCAC GTGCAAAGGC CACCAAGCAG GCGTGTACTT GGGTGATCGT GTTTCCCTCT CATGATCATG 001200 001201 GCCCTCATCA TTCCTGGCAC TGCACCCTCT GCTCTTGTCA CCTTTATCTA GTAATGCATG AGTGGTTGAT ATGGTCAGGC 001280 001281 CCTGTGTCTC CACCCAGATC TCATCTTGAA TTGTAATCCC CATGTGTCAA AGGAGGAACC TGATGGGAGG CAATTGCATT 001360 001361 ATGGGGGTGG TTCCCCTATG CTGTACTTGT GATAGTGAGT TCTCCTGAGA TCTGAGGTTT TTTAAGGTGG CGATTTTTCC 001440 001441 TGTGCTTGCA ACTGGACTTC TCTCTTGCCT GCCACCATGT AAGACGTGCC TGCTTCCCTT TCCACCATGA TTGTAAGTTT 001520 001521 CCTGAGGCCT CCCCAGCCAT GCGGAACTGC GAGTCAATTA AACCTCTTTT CTTCATAAAT TACCCAGTCT CGGGAATGTC 001600 001601 TTTATAGCAG GGTGAGGATG GACTAATACA ATGGGATTCT TCAGGTGTTC AGACCCCAAG TGCCCTCGCT TTCTTCCCTC 001680 001681 CATGCCCTCT GGACTCTCTG ACTCGTACTA ACACACTTTG GAACCATGAT GTGGTCCTGT TGACCTGCCT GTGCCCCAAG 001760 001761 GTTCCTGAAG ATCACCACTA GCACAGAGTG AATAATGGCA AAATTCGACC TCCTGGCAAA TTGCTGCGTC TTTCCACTTG 001840 001841 CTGTTCAGGA CCACTAAATG CTGAAATGTG GATGCATACC GAAATAAAAG CAATTCATTG TGT |
Predicted Small Protein
Name | NONHSAT085002_smProtein_632:718 |
Length | 29 |
Molecular weight | 3155.6261 |
Aromaticity | 0.107142857143 |
Instability index | 68.6 |
Isoelectric point | 8.49676513672 |
Runs | 5 |
Runs residual | 0.0246478873239 |
Runs probability | 0.0482070305601 |
Amino acid sequence | MPIISALWEAKVSGSLEVRSSRPAWPTW |
Secondary structure | LLHHHHHHHHLLLLLEEELLLLLLLLLL |
PRMN | - |
PiMo | - |