NONHSAT085161
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT085161 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1970 nt |
Genomic location |
chr22-:37735624..37781323 |
Exon number |
3 |
Exons |
37735624..37737056,37738642..37738744,37780890..37781323 |
Genome context |
|
Sequence |
000001 AGTGATAGTG CTTTTAAGAT GTTTAAAGTT GGCTCAGGAT TAAATGAGTT AATATGGGAA GTGCGGAGGC CCAGCCAGTG 000080
000081 CAAGCACTGA AGACTTTTCA TCTTGTCGGA GGCCGCCCAT CCCTCCCCGG GCTACCTCTC AGGGGGCTTC GCTGTCCGAC 000160 000161 ACTGGAGCCT CCATTTCCCC CTTGCGGTCC CCACATGCAA TGCCCCTGTC TTGGGACAGC CCTGAGGGTA CTGGAGGGCA 000240 000241 GGGAAGCGTT CGCCCCTTGG GACCCTGGGG GAGGAGCAGG TGGAGGAGGC AGAGCCAGGA GGGCGGGCCT AGCCGGCGCC 000320 000321 TGGTACATAG TAGGTGCTCC ATAAATGTTT ATTGAATGAA TGAATGGAGG CCATGCAGGC AGAGGCAGCC GTGCTGCGCA 000400 000401 GGCACTGGTG AAAGAGCGGG TCCAGTGGAC ACTGGTGACA AATTCTACCG CCAGTAATCA CTTGTGAAAA ATCAACAGTG 000480 000481 AAGCCCAGTG GCTCCCGGTC CCCCGGAGAA ATCTGAGTGG ATTTCCAGAA GAACAAGTCC AATCTCTGCC CTGCTGCCCT 000560 000561 CCATCTGTCT ATTTCTCTCC TAGACTTCGG CTTCAGACAG ATGTGGTTTC AAAGCTGCAG TCCCGGCCTT CCTGAGCTGT 000640 000641 GTGACCTTGG TTACGTCCAC GTGCCCATTG CCTCGCCTGG GCCTCACTTT TCTCATCTGT ATCATGGAGT TGGCACCACC 000720 000721 GGCTCTGCCC TCAAGGTTTG CCGCGCCTGC AGAGGCCCCT GAGCATTCAG CAGGTGCTCA CTCAGCAGGA GCTGCCAGAC 000800 000801 GTTGAATGTG TGATGGGAAT CATTGGATGC TGCCGCCTCT CCGCCCACCC GCCACCTGAC ACTGCCTCCT GGCTCTCCAT 000880 000881 CACTGCCCAG GAGTCGGGCA GCCTCCCCGC TCCCTGCTAT TTCTTCTCTG CACCTGACGC CGCCTCCTGG CTCTCCATCA 000960 000961 TTGCCCAGGA GTCGGGCAGC CTCCCCACTC CCTGCTATTT CTTCTCTGGA GCTTCCCAGG AGGTTAATAG CAGCTTCTCA 001040 001041 CCAGGATATT TGGCTTTTTA AGGAATCTCC TTGCCTCTTT CTTCTCTGTG AGGATATTCT CAGGATGGTT GCGGTGGAGA 001120 001121 AGGGAAGGAA GGAGACTCTC GAGGCATTTG CCAACTAAGG GGGGCACTTA GGGGTAGGTG GGGGGGGCCA GTTCCGGGCA 001200 001201 GAACTTGGGG CAGACAGTGC CCTGTTTCCA GAACAGCTCC CAGTGCCGGG CTGGGCTGGG CTTAAATGCA GTGGGAGAAG 001280 001281 CTCAAGGGTG GGGTGGGGTC ACAGGCTCCA CTTGGAATGG GCCAGGTCAT TTGACTATGG GGGCATTTCT GAGCCTGGTG 001360 001361 GGGCCTCAGT CTCCCCTCCT GGAAGGTGGG CCTGATGATC CATGCCAGCC TGTAAAGGAA GGGAAAGAGT TTTGCTGAGC 001440 001441 TGCAGAAGGA GGTGCAGACA AGGCGAGGGG CTGGGTGTTG GGGGAGGCCA GCTGAGCGCC CAGGACCCCT CTGGCCCCAC 001520 001521 CCCAGGTCCT TGGGCTCCAA CTGCTCTCAG CCCTGCCCTG AGCTCAGGAA TGGGCCCAGG CCTGAGAAGG AGGTCAAAAC 001600 001601 TCTGCAGCCC TTCCACTACT ACTTCGGGGG GCTCAGCACA GCTCCTCTGG GCTCAGGTCC CCAGGCCTTT CCCTGATGTA 001680 001681 ACCCCCCAGT CAGGCCCGCA CAGTAGGGGA GGTCCACCTC TTATGTGTGT GTTTTAAATT GCGGTAAAAT GTACGTAACA 001760 001761 TGAAATTTAC CATTTTAGCT CTGTAAGCAT ACAGGTCCGT GGCATTCGGT ACATTCACAT TCCTGTGTGG CCATGACCAC 001840 001841 CATCCATTTC CGGGGCTTCT GCATGATCCC GAACAGAAGC TTGCACGCCC TGCGCCACGC CCCCTCCCAT GTCAACCCCC 001920 001921 GTAACCGCTG GTCTTCGTCT CTATGAATTA AACTATTCCA GGTACCTCCC |
Predicted Small Protein
Name | NONHSAT085161_smProtein_53:343 |
Length | 97 |
Molecular weight | 9809.3133 |
Aromaticity | 0.0625 |
Instability index | 51.578125 |
Isoelectric point | 9.29742431641 |
Runs | 12 |
Runs residual | 0.009235395189 |
Runs probability | 0.0455455455456 |
Amino acid sequence | MGSAEAQPVQALKTFHLVGGRPSLPGLPLRGLRCPTLEPPFPPCGPHMQCPCLGTALRVL EGREAFAPWDPGGGAGGGGRARRAGLAGAWYIVGAP |
Secondary structure | LLLLLLLLHHHHHHEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHLLL LLLEEELLLLLLLLLLLLHHHHHHLLLLEEEEELLL |
PRMN | - |
PiMo | - |