NONHSAT086637
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT086637 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1864 nt |
Genomic location |
chr22-:38243456..38245319 |
Exon number |
1 |
Exons |
38243456..38245319 |
Genome context |
|
Sequence |
000001 GCCATATCCA GAAGGAAGAG GAGCCGCGTT CCgtggctca cacctgtaac cccaccagtt tgggaggccg aggcgggcgg 000080
000081 atcacctgag gctgaggccg ggggtttgag accagcctga ccaatatgga gaaaccccgt ctctactaaa aatacaaaat 000160 000161 tagccgggag tggtggcgca tgcctgtaat tccagctact cgggaggctg aggcaggaga gtcgcttgaa cccgggaggc 000240 000241 ggaggttgcg gtgagccgag atcgcgccat tgcactctag cctgggcaac aagagggaaa actccgtcta aaaagaataa 000320 000321 GAGGGTTACA AGTAGCCTGA ATTTTCCTCT CTTCAAATAG GGACTTCTCA AAGAAGGTGA ATCTATAATA GTGGTGTAGA 000400 000401 TTCAGATATA AGGACACGTA TTTGGCGTAA AGGAGAGGCA AAGTTAGAGG AACCAGAAAG AATGCTACAC AAAAGATGGC 000480 000481 CGGCTTCTCG CGTGAAGGAA GATTCGGATA CGGGGGCCTG ATGGATTTAG TTGTAGGCGG TTTGCCTGCA GCGAGTAAAT 000560 000561 TATTCAAACG TTCGGACTTC ACAAGACTAA ACTTACTGGG GATAAAAATT GAGATTTggc cgggcgcgat ggctcacgcc 000640 000641 tgtaatccct acactttggg aggccgaggc gggtggatga tctgagatca ggagttcgag accagcctgg ccgaaatggc 000720 000721 gaaaccccgt ctctattaaa aatacaaaaa ttagccggga gtggtagcgt ccgcctgtaa tcccagctac tcaggaggct 000800 000801 gaagcaggag aatcggtgga acctgagagg cagaggctgt agtgagccga gatcgcgcca ctgcactcca gcctgggcga 000880 000881 cagagcaaga ctccgtctaa aaaaaaaaag aaaaaaaaaa aTTGAGATTT GGTCCCATGC AGTAAGAGGG AATGGAGAAC 000960 000961 AGGAGCCACC CAACTTTGGA CATTAAAGTT GGAGCAGGCA AAGATGAGGC CAGCTGTGTC GCGAAGCCTG GGACATGGGC 001040 001041 AGCTCTTGAG TACACCGGGT TCGAGGCCAG GGGAAACCCT CAAGGTAGAG ATGGGGTTAT AAAGCAAACC AATAAAAACC 001120 001121 GGTGTATGAG TCAAGGAGAG GCCTTAGTTT AGCCATCTGC CCATACACAA CACCTAGTgg aaatccgagt tccagtccct 001200 001201 actccgccac tgatttgctg tgtgaccAGG ACTCTCTGGG TCCCTTTgtc acgccgccct ccttgctttt cccactgagg 001280 001281 cacgctccac ctctgggatt ttgcactcac tgttatccaa gtctagaatc gaatgcagtg gcacccccac tcccattccc 001360 001361 ttccccatcg gtatctgcat ggcaccttca ggtgtctgct ctgatgccat ccactcaaca tcctattgag aattgcaatg 001440 001441 cccagcccca actccctatg ctgcgttctt gttttgtgtt tcttccttgt gctgtcacca GAGGTGACAC AAATTTGGAA 001520 001521 ATAATGGAGC TTAAGCTTTA CCGACCCTCG ATTTGGTTCA GGACCTTCCC TGAACCAAGG AAGAGTCACA gtctcttcct 001600 001601 tggttcaggg agggtcccca acaatgtcct catggtcctt tgcttttgta aaatttgtga aatattttta ttgctgaaac 001680 001681 cacctttgca aaaattgtaa cagtgagaaa ataatgacag tgaaagagat ctgatctaac caaccctcat cttccattta 001760 001761 atcttcagac tgcccttaat cattcctggc tcgaaccgag ctaactttgg gagacattta gtttctagtt taaataataa 001840 001841 cccttctccg aggcctggca cagt |
Predicted Small Protein
Name | NONHSAT086637_smProtein_1403:1699 |
Length | 99 |
Molecular weight | 11304.4612 |
Aromaticity | 0.0918367346939 |
Instability index | 45.2571428571 |
Isoelectric point | 9.09735107422 |
Runs | 16 |
Runs residual | 0.0242227732214 |
Runs probability | 0.0363562091503 |
Amino acid sequence | MPSTQHPIENCNAQPQLPMLRSCFVFLPCAVTRGDTNLEIMELKLYRPSIWFRTFPEPRK SHSLFLGSGRVPNNVLMVLCFCKICEIFLLLKPPLQKL |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHLEEEELLLEEELLLLLHHHHHHHHLLLLEEEELLLLLLL LLEEELLLLLLLLLLEEEHHHHHHHHHHHHLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo oooooooooooooTTTTTTTTTTTTTTTTTTiiiiiii |