NONHSAT087155
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087155 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2584 nt |
Genomic location |
chr22-:44814810..44819154 |
Exon number |
3 |
Exons |
44814810..44815596,44817118..44818243,44818484..44819154 |
Genome context |
|
Sequence |
000001 CGCAAGGGGG TGGGAGGGGC CAACTGAAGG CCAGTGTGTG CCAGGCCCTG CACCAGGCCT GGGGAACGCT GCAGGGGAGA 000080
000081 AGACAGGCCT GCCTCTGCCT CACAGGAAGG GCGTTCTGTT CAGGGAGACT AAGAGTAAAC AAATCAACCT GCTCATGAGC 000160 000161 AAGGTCAAAT GAGAGAGCCA CAGGCATTGG AAAGAAAACT GGTGCTGGGA AAACCAGTGA GGACTGTGAG CTCGGTTATG 000240 000241 AGGATGTGGG AGAGACACTC CCTGAGGAGG ATGGGGAGGG GAGTGGAGAC CCTAATAGCT GGCAGGAAAC AGCCAGGCAG 000320 000321 AGACCTGGGG GCGGAACGTT CTGGCGGAGG GAAAAAGTGC CAAGTCCTAG AGGCGGGAAA GAGCTTGATG CATGCGAGAG 000400 000401 AAAAAAGCAA GGCCTTTGTG GCTGGAGGAG AATGAAAGTG GGGAGTGGAA GGCGAAGTCT GAGAGGTAAG CAGGGACTGG 000480 000481 ATTATGCAGA GCCTTGAAGA CTGAATGAGG AATGTGAGCG TTCCTCTGCA CATAACCAGA GGCCAGGGAA TGGTTAAGGG 000560 000561 TGAGAAATGA AGCCACTTGG GACTTCCACA TTTGGCCAAG GCAGAGTAGC TGGCCCTTCT GTAAGTCAAC AACTATACAA 000640 000641 TTAAGTCTGG GTGTGGTGGC TCATGCCTAT AAGAGTGAGA CTGTCTCAGA AGCAAAACAA AACAAAACAA AAACAAAAAC 000720 000721 AAAAGAAAAC AAAAAAACTA TGCAATTAAA TTAAGTGCAC GAGGCAACTC CTTGGAAGCA GTGGGCAGCA GGCAGTGCAA 000800 000801 GACTGCGATG CCTGAGAGAA GGAAAGCCCG CAGAGGCGCC TGCAATCAAC GACCAGCTCC TGTCCGGGCA GAATTTTCTG 000880 000881 ACCACAGCAC AGAGACCTGG AGTCCAAACA CAGCTCAGTG GCCATGGTGA GCGGACAAGA CAGGCATTAG GGGTGGCTGG 000960 000961 GATAGAATCA GGCAATCAGA GAGGTGGAAA CTGTGTTGAC AGGGAACCCT AGGAGTCAAT GTGGGGGTTT GCTGTTGAGT 001040 001041 TCATCGTGGA GGGATGAGCT GTACATGCTC GGAGAAAGAA GACCAAGACT TTCAGAGAGC AGACACTATG GGATTGAAAG 001120 001121 CAAAATGGAA CCGCCAGAGG TTTAAGCTGA GCTAGGGAGA GAATGCTCCT GGTGAATATT GAAATTCCAG CCTTGCCAGA 001200 001201 GTAGAGAAAT CTTAACACCT TTGATAACAC TCCTGGCATC CAGCTGAGAC CCTAAAAAGG TTATGCCTAA GAATGACACA 001280 001281 ATGGACTTTG GGGACTCAGA GGGGAAGGGA TGGGAAGGGG GTGAGGGATA AAAGACTATA AATTGGGTGC AGTGTATACA 001360 001361 GCTCAGGTGA TGCAAAATCT CACAAATCGC CACTAAAGAA CTGACTCATG TCACCAAACA CCACCTGTTC CCCAATAACC 001440 001441 TACAGAAATA AAAAAATTTA AAAAAACATA AATAGTATAG CAAGCCAGCA TCATAATAAA TGGTATTCTA ATGTTAGAAA 001520 001521 AAAAAGGCTA TGCCTTAGGA GTAAGGACAA CAGCCTAGTA TACTTATTTA TACTAAACCT CCCCCAGCAA AACCTAAGGG 001600 001601 GCTTTTTGAA AAGATCTGCA GGGAAAACAG AATTAAGAGA GAACTCCTGC CAAACCAAAG GGGTCAAGGA AACACATAGT 001680 001681 CTTTCTACCA TCCACACGAC CAAAGTGTGA AGACAAGCCT ATATAAGTTC AAAGTGGTCA GCTAGTAATT TAACTGCCTG 001760 001761 ATAAAATAAG AAACACTTTT TAGAGGAAGA TAACAAAGAG ATGAGTGCAG TCTATAAGAC TAAAGGCACA AGAAACTGTA 001840 001841 CATAAGCACT GTGCTCTAGT TGATAAAGTC ATTTCTCACA AGACCATGAG TAACAATTCT GAAACCATGA TGCAAGAAAA 001920 001921 CTGGAACTCA ACAATGTAGT GGATGGATGG TGGGTAGTGG GAGCCCAGTT TCTTACTGTC AGAGTGTCAG ATTACAGGCA 002000 002001 AGGAAAGGGA GGGAGCTACA GTGATTCATG TGGAAAGGAA TTAGAGTTGT AGACATCAGT GTGAACTCAT ATTTAGGTTA 002080 002081 AAATAAATAC AGATGCTACC TATAGCTATA CGTATATACA TAGGTCAGTA TATACAAATA TATCTCTTTG CTCTGTCCAT 002160 002161 GTCAAAGACA TTCACCATGT TTTTTTATAA CTTGATAATT CATTTCTTTC TATTGCTGAA TAATATTCCA TTGTAAGGAC 002240 002241 ATGCCACAGT TTAGCCATTT GCCTATTGTT TCATGTTTTT GACAATTATC AATAATGCTG CTATAAATTG TTGCATGCAG 002320 002321 GTTTTTACAT TGACATAAGT TTTCAAATCC CTTGAGTGTG CCCAGGAGGG CAATTGCTGG ATGGTATGGT AAGCTTGTGT 002400 002401 TTGGCTTTGT AAGAAACTGC CAAACTGTCT TCCCAAGTGG CTGTGCCATT TTGCATTCCC ACCAGCAAGG AATGTGAACA 002480 002481 CCTGTTGCTC TGTATTCTTG CCAGAGCAAG GTGTTGTATT TAAAAATTCA TCACCAATCC CCGTCAGCTT AGAGGTCCTG 002560 002561 GAGGTGATAA TACCCCAGTG GAAA |
Predicted Small Protein
Name | NONHSAT087155_smProtein_662:748 |
Length | 29 |
Molecular weight | 3412.1316 |
Aromaticity | 0.0 |
Instability index | 71.4107142857 |
Isoelectric point | 11.3652954102 |
Runs | 7 |
Runs residual | 0.0467806841046 |
Runs probability | 0.0203649027179 |
Amino acid sequence | MPIRVRLSQKQNKTKQKQKQKKTKKLCN |
Secondary structure | LLEEEEELHHHLHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |