NONHSAT087195
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087195 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1633 nt |
Genomic location |
chr22-:45396446..45399500 |
Exon number |
3 |
Exons |
45396446..45397167,45397748..45397903,45398746..45399500 |
Genome context |
|
Sequence |
000001 AACCTTCTGG TGGCTTCCCC TTGCTCTTGG AATGAATCCC AGGGGCCTGC AGAGCCACAG GGATGGCCCT GCCCACCTGC 000080
000081 TCGGCCTCTG CCCCAGAAGC TCCTCCTCGC TCCTGCGGGG CAGCTACAGA CACCTGGAGT GCTTTTCTGC CTCTGCGGCG 000160 000161 TTCTTAGCCT TGCTTGTGTA GATCTTCCTA GATCAGCTAC TGTGCTAGAC TGTAAGCTCC CTGAGGGGCA GCTGCAGACA 000240 000241 CCTGGAGTGC TTTTCTGCCT CTGCGGCGTT CTTAGCCTTG CTTGTGTAGA TCTTCCTAGA TCAGCTACTG TGCTAGACTG 000320 000321 TAAGCTCCCT GAGGGGTGCC TGCTGAGCTC CCCTCTGCCT TTTCCCAGGG CAGTGATGGT GTGAAGATTG GCAATGATTT 000400 000401 GTTAACTGTC CTAGGGGAGC CCCTAGCCTG CAGTAGGCCT GGAGCAAAGG GAAGATTTTG AAATCGTGTG TGTTGAAATG 000480 000481 AGTGGACCCA GAGATGAATG AGACAAGCTC CCTGCCCTTG GAAACCCAAC AAAAGAGTGA GGCGTGGAGA ACAGTTTCAA 000560 000561 GGAACTTCTG GAAAAGGGCT GTGAAAATCA TGCTGCGGGA ACACCTGCAT CATTGCTGGC CTGGAAACTG AGGACGGCTT 000640 000641 CTGGGAGGGG GTTGCCTGGG AGATGCGTCC ATAGGGCCTC CTGGGGAGCG GATGGGCGCG GATGGTGGCC AAGCTTGTCA 000720 000721 AGGGAAAATG GCCCCAGAGA AATGCGCAGT GGGAGGAGAT AAAGAAGAAT TCTACTTTTT AAAGGTTTTT CTTAGAAAAG 000800 000801 CAACACGTGC TCATCGGGAA AATGGCAGTA CAAGTTTGAA TATCGTAAAG CGCGGGTCTC ACTTCTTCCT GCCCCACTGT 000880 000881 ATCCTTGGGC GAGAGCGGCG GTGGCCTCGA GGATAATCCT GGGACTTGGG TCGGACTGGG CTGGTGAATC TTCAGGACAC 000960 000961 ATCGGAGGAG GGCAGCTTTC CAAGGTTGAG CCGCCTGGGA CCGCCGTGAA TGGAATTGTC GACACTGCCC CCTGGCCCGG 001040 001041 AATGCCTCCA TGTTAGCCCC CTGCTCATCT CCAGCTGGTC TCCCATGGTG TAGGGTAAAA GGTGATGGAG CCGGAAGAGC 001120 001121 AAGGGCCCCA TAGTCAGCAC ACGGGGGTTC ACGGCCCAGC TTCCTGTGTC TTGGCTGAGC AACCTTGGGC AAGCCATTCT 001200 001201 GCCTCTCTGA ACGAGCTCCG TTTGCCAGCT GTGAAGTGGG GGTGGGAATA AGACCCACTC ACCTGGTGAT TGCGATGAAA 001280 001281 TCAGCAGATA TGAAAGTGCT TTTAGACTGC AACGTGAAGG TGTTAAACGT GGGTCTGTCA CTAGAGATGA GGGTTGACTT 001360 001361 GAACCACAGG AACCACCCCC CTGCCCGGGC TCTGACCTGG GCACTTTTGT CTTGTTGCTT GTCCCCGCTG GGGAGGCGAT 001440 001441 CTTTCCATGC GAGAGCGTCA TGTTGCTTTT TGCCCCCGTA AAGGTTGACG ACCGCTATGC TGACTACGCC GCCTGCATCA 001520 001521 GCCACTCCAA AGAGTCCGCT TTGATACCTT AGAGTCTTAA AACACCTGCT GTCGGAACCG TACAATTGAT TTCAATTAAC 001600 001601 TTTGAATTTT TTCAATGAAA TGACTCTGAT AAT |
Predicted Small Protein
Name | NONHSAT087195_smProtein_1274:1480 |
Length | 69 |
Molecular weight | 7574.9708 |
Aromaticity | 0.0441176470588 |
Instability index | 43.1838235294 |
Isoelectric point | 9.34649658203 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.0498626969216 |
Amino acid sequence | MKSADMKVLLDCNVKVLNVGLSLEMRVDLNHRNHPPARALTWALLSCCLSPLGRRSFHAR ASCCFLPP |
Secondary structure | LLLLLLEEEELLLEEEEELLLEEEEEELLLLLLLLHHHHHHHHHHHHHLLLLLLLLLLLL EEEEELLL |
PRMN | - |
PiMo | - |