NONHSAT087247
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087247 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4364 nt |
Genomic location |
chr22+:46119983..46147955 |
Exon number |
4 |
Exons |
46119983..46120138,46138006..46138123,46141182..46141229,46143914..46147955 |
Genome context |
|
Sequence |
000001 TTGGTTCTAT ATCTTTGCAA TTGTGAATTG TTCTGTGATA AACATACGCG TGCAGGTGTC TTTTCCTTTG GGTAGATACC 000080
000081 CAGTAGTGGG ATTGCTGGAT TGAATGGTAG GTCTACTTTT AGTTCTTTGA GAAGTCCCCA TACTATTTTC CATGAACACC 000160 000161 CTAGAGTTTA TAGTATTAAG TCCAACTTAC ACTGTAGATA ATTAATAATT GCCCTCTAAA AAAAAAAATC AACACTCTTT 000240 000241 AGAGGAATAT AATATAATCC AGAATTGCCA CAGCTGCATT TTTCAAATCG GACAGACAGA TGATCTAGTT TATCTACCTT 000320 000321 CCAAAAAAAT TAAAAAATTA GCCAGTGCTC CCAGGTGCTT GGGGGGCTGA GGTGGGACGG TTGATTGAGC TCAGTAGGTC 000400 000401 GAGGCTACAG GGAGCCGTGA TCGTGCCACT GCACTCTAGC CTGGGCAACA GAGCGAGACT CTGTCTTTAA AAAAAAAAAA 000480 000481 AAGTATATAA TGGATTGCCT TATGTCTCTA ACTATAATAC TTCCGTGTCC CTCCTCTTAC CCTCCCTACC AGTCCCTTTG 000560 000561 GAATTGAAAA GATCTAGTTC ATTCCAGTGT CTCCCCATTA TATGTATTTA CATAGAAATT TGTAGACAAC ATTTCACAAG 000640 000641 GATTTGCAAA GTTCAAAGTA AACCTCATAT TCTGCATTCT GTGTGTATTA CTTTTTCTAA TAGATGGGGC TTTATGGAGG 000720 000721 AAGTAAAATG AAAACAAATA TGAGAACTTT CTTTAGGATG AGAGTAATTT TGATTCTTGT CATAAATGTT TTCTGACTTG 000800 000801 AATTTCTCTT ATGTTATTAT CTAGTAAAGA GCTGAAGTGT TTTCCGCGTG AATTCCAAAA TCTGTTCTAG CTCAATTCTG 000880 000881 AAAGTATGTT AAGGAACTTT TAAATTACAG GGCATATGTC TTACCTCAAT TGGATTGTGC GTTTTTCCTG TGTTTTTCCT 000960 000961 CTTGTCAGAA GCAAGTTGCA CCAAATCTCA GCTTATTGAT TTGAAGATTG AATGTATAGG CAAGATCTGG CTTGCTTAGA 001040 001041 ATTCCACTTC TTTGTAATGT AATCCCAGAT CAAGAAATAT GTCAAAATTC ATAAATCAAA CTGTCACCAT TAGTTCCCTG 001120 001121 AACTTACAGT TCCTGTAACA GTAAATGAAA TTAAAATTCC TATCTAGAGG AAACCTATCA TGGTTTAGGT TGTTGCAGCT 001200 001201 GTAAAATTTT TTTTAAAAGA CTAAAGGATG GTCTACCATT TGACTCCAAA AACCCCTTTT CTATGTCTTG TTCTACAATA 001280 001281 ATTGACTTAT TCTCTTCCAG GAAATGCATA ACATTATTTA AAAAGAAGAA TGATACTAAT TATATAATTG CAATGTAACA 001360 001361 GCGTACTATT GTCGATAACC ATTACTATTG CAAACTAACT AGGCTCCAGG CCCTTGACCT GTGCTTCATC GTGGAATTCC 001440 001441 TACCACTGCA TATTCCTCCC TAGGCTTTAA GCGTGAAGGC AGACACATCA TATTTGGCTT AACACCTGCC GTAACACTGG 001520 001521 GTACATAGTG TAGTGAAATT AATGGACGCT GGATGACTTT GCTTGCTTTA CTGGTGAGTC AAGCGTAGAG TAGTTACTTG 001600 001601 CTTGGAGCGA TAGCAGGCCA AATTCTGACT CCAGAGCCCA TACTTTTCCT GTTACCATCC ACTGCTTCCA CCGTCACCAC 001680 001681 AAAAGAAGAT GTTTGAGACT GGTCCTTTGA AATCTATGAC CAAATTTGTG TGACTCTTTG AGGTGGCAGG ACATTGTATT 001760 001761 ACAGCTTTTT CCACAATTCT TACTGAACTT TTTTCATTAT CATCTAATGT CTAGTGTTTT AGTAAATGTA GTTTCTTTTT 001840 001841 TCTTTCCCTT TCTTTTTTTC TTTTTTAAGA GGTGGGGTCT TGCTCTGTTG CTCAGGCTGG AGTGCAGTGG TGTGATTATA 001920 001921 GCTCATTTTA GCCTTGAGCT CATGGGCTCA GGCAGTTCTC CTACCTCAGC CTCCCACATA ACTGGGACTG CAGGCATGTG 002000 002001 CCACCATGCC CGACTACTAA AAATTTTTTT TTGGTAGAAA AACAGGGTCT TACTGTGTTG CCCAGGCTGG TCTCAAACTC 002080 002081 CTGGCCTCAG GCAGTCCTCC TTCCTTGACC TCCCAAAGTG CTCGGATTAC AGGTTTGAGT CACCTTACCT GGCCTGAATA 002160 002161 TGGTTTCTTT AAGGTTCATG TTGAGGGCTA CATTTCAGGC ACATGCGTAT TTCCGAGAAG CATAATTTAC CCCATACTGT 002240 002241 AGACACAGAA AGGGAGACAT TGGGGAAGTA ATGTGCTGCC CATGATGATT CCGCAGTTTG TAAAAGTCAT GAATCCAGTT 002320 002321 TTCCTAACTG CTACTCAGTT TTCTTTACTT ACGCCATATG ATCAATTTTT AGATAACAGA CGTTTTAATT TAATTTAATT 002400 002401 TTATTTTTGA GACAGGGTCT TGCTTTTGTC ACCCAGGCTG GAGTGCAGTG GTGTGATCAC AGCTCACCGC AGTTCTGTGC 002480 002481 TCAAGTGATC CTCCCGCCTC AGCCACCCAA GTAGCTGGTA CTAGAGGTAT GTCACCACAC CTGGCAAATT TTTGTATTTT 002560 002561 TTTTTGTAGA GGTGGGATTT TCCCATGTTC CCCAGGCTGG TCTTGAACTC CTGAGCTTGA GCAGTCTGTC CACCTTGGCC 002640 002641 TCCCAAAGTG CTAGGATTAC AGGTGTGAGT CACCACGCCC GGCCGACAAC AGTGATTTTA AATGGATTTG TGTTTAACAG 002720 002721 TAAAAAACAA TTATTTCACA GTATCCAAAA AGAAGAATAT CTGAGACTTG GGTGAGGGGA AAACCAGCTG TATAAACTGA 002800 002801 GAGCTGTACC TTGTTCCTGT ATGGAAGTAT GGAATATGGG AAAGATATTA GTTATTTTTA AACTGATTTT TATTACTAGA 002880 002881 CCAATTAAAA TCCCACTGTG AAAAATAAGC CATAATTTTG ACTATAAAAT GAAAATAATT GAGGAATTGT CATATCAATA 002960 002961 TTAAAATATA CTTTAAGGCT AAAATAATCA AAACAATTTA CAAAAGTTTA TAGGTTAGTG GAGGCAGACA TAGTTTCCAA 003040 003041 ACAGACCCAG GAGAAGTTAT ACGAATTTAC CATGTGATAA GGATAATCCA GCAACCCGGG GAGAAAAGGA AAGCTTATTA 003120 003121 CAAAAGCTTG TAAAAAAGCT TATGTAAAGA GTTTTTCTCC ATGATAAGAA GAGAACATGC TCCGTTCATT AGTGATTGTA 003200 003201 GTAATTCTTT CTTTCTTCTA CTTTCCTGTT TTTTTTTGAG ACAGAGTCTT GCTTTGTTGC CCAGGCTGGA GTGCAGTGGT 003280 003281 GTGATCTCAG CTCACTGCAA CCTCTGCCTC CTGAGTTTGA GTGATTCTCC TGCCTCAGCC TCCTGAGTAG CTGGGATTAC 003360 003361 AGGCATGTGC CACCATGCCT GGCTAATTAT TGTATTTTTA GTAGAGACGG GGTTTCACCA TGTTGCCCAG GCTGGTCTTG 003440 003441 AATTCCTGAC CTCAAGTGAT CTGCCTGCAG CGGCCTCCCA AAGTGCTGGG ATTACAGGTG TGAGCCACCA TGCCCAGCCT 003520 003521 CTTTGTTCTT CTTTTATACT TTGTACACCT CTTAACCCTT CTTTGGCCAA GATCTGGGGG CTTTAGCAAT GACAATTTCA 003600 003601 ATTATACTTT CAGTTGAAAG ATTTTTAAAA GTAAAACGTT AGCATTGGAT CTGGAGAATT TTGCTAACTG AGATAATTAA 003680 003681 TAGCTGGGCT GGTGGTGATA GGGTTTGTGT GTTTTTGAGA GAGAGAGAGA GAGAGAGAGG AAGAGACAGA CAGAGATGGA 003760 003761 AATATAAAGA TCATTCTTCC ACTGTTATAT GTGTTTTTTC CCCTTTAAAG GAATAGGCAT TTGAATTTCC TCTCTGTTGT 003840 003841 CAGGTGTTCT GACTTGGGTA CATCAGCTCT TACTGAGTGC TTGAATGTTC AGGATTTCTA TGACATATCT CAATCTAATG 003920 003921 AAAATCTGAC TGTGAAATGT CTATATATCT CCCCAGGCTT CGTTTTCTTG GTTAAATGAG AAAAGTGCTC TTATTTCAAA 004000 004001 TGTTGGAAAG TAGCTCTACC TTTTTCTGGA AAAAAAAAAA AAATAAAAAA AAAATAATAA TAATAATAAT AATAATAAGA 004080 004081 TGGGAAATGT CTGTCCCACA TCTAAAGCAG TTTTGATCTT TAGCATATTT AGTTTTTTTT TTTTTTTTTT TCCTGGCAGC 004160 004161 AGCTGAAAAT TAAGAGGATC AAAGTTATGT TCCTATAAAA GACTTTTTTC CTGTCAGTGC TTGAAGGCAT TGTCTGACTC 004240 004241 CCCCCACCCC CACGTTTTAA AAGCTGATTG CTTATCTTAT TCAGGTAGAA TTTAATTTCA TGCCCATCAT ATTCTAATAG 004320 004321 AACAAAAATG ATACTTAGTT TCAGACTGTG GATTTTAGTT TGAA |
Predicted Small Protein
Name | NONHSAT087247_smProtein_3509:3616 |
Length | 36 |
Molecular weight | 4110.7296 |
Aromaticity | 0.228571428571 |
Instability index | 45.2685714286 |
Isoelectric point | 6.49493408203 |
Runs | 5 |
Runs residual | 0.0382566585956 |
Runs probability | 0.0175234057587 |
Amino acid sequence | MPSLFVLLLYFVHLLTLLWPRSGGFSNDNFNYTFS |
Secondary structure | LLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLEEEL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | i?????????????????????????????????? |