NONHSAT087247

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT087247

Source

NONCODE4.0

Same with

,

Classification

sense

Length

4364 nt

Genomic location

chr22+:46119983..46147955

Exon number

4

Exons

46119983..46120138,46138006..46138123,46141182..46141229,46143914..46147955

Genome context

Sequence
000001 TTGGTTCTAT ATCTTTGCAA TTGTGAATTG TTCTGTGATA AACATACGCG TGCAGGTGTC TTTTCCTTTG GGTAGATACC 000080
000081 CAGTAGTGGG ATTGCTGGAT TGAATGGTAG GTCTACTTTT AGTTCTTTGA GAAGTCCCCA TACTATTTTC CATGAACACC 000160
000161 CTAGAGTTTA TAGTATTAAG TCCAACTTAC ACTGTAGATA ATTAATAATT GCCCTCTAAA AAAAAAAATC AACACTCTTT 000240
000241 AGAGGAATAT AATATAATCC AGAATTGCCA CAGCTGCATT TTTCAAATCG GACAGACAGA TGATCTAGTT TATCTACCTT 000320
000321 CCAAAAAAAT TAAAAAATTA GCCAGTGCTC CCAGGTGCTT GGGGGGCTGA GGTGGGACGG TTGATTGAGC TCAGTAGGTC 000400
000401 GAGGCTACAG GGAGCCGTGA TCGTGCCACT GCACTCTAGC CTGGGCAACA GAGCGAGACT CTGTCTTTAA AAAAAAAAAA 000480
000481 AAGTATATAA TGGATTGCCT TATGTCTCTA ACTATAATAC TTCCGTGTCC CTCCTCTTAC CCTCCCTACC AGTCCCTTTG 000560
000561 GAATTGAAAA GATCTAGTTC ATTCCAGTGT CTCCCCATTA TATGTATTTA CATAGAAATT TGTAGACAAC ATTTCACAAG 000640
000641 GATTTGCAAA GTTCAAAGTA AACCTCATAT TCTGCATTCT GTGTGTATTA CTTTTTCTAA TAGATGGGGC TTTATGGAGG 000720
000721 AAGTAAAATG AAAACAAATA TGAGAACTTT CTTTAGGATG AGAGTAATTT TGATTCTTGT CATAAATGTT TTCTGACTTG 000800
000801 AATTTCTCTT ATGTTATTAT CTAGTAAAGA GCTGAAGTGT TTTCCGCGTG AATTCCAAAA TCTGTTCTAG CTCAATTCTG 000880
000881 AAAGTATGTT AAGGAACTTT TAAATTACAG GGCATATGTC TTACCTCAAT TGGATTGTGC GTTTTTCCTG TGTTTTTCCT 000960
000961 CTTGTCAGAA GCAAGTTGCA CCAAATCTCA GCTTATTGAT TTGAAGATTG AATGTATAGG CAAGATCTGG CTTGCTTAGA 001040
001041 ATTCCACTTC TTTGTAATGT AATCCCAGAT CAAGAAATAT GTCAAAATTC ATAAATCAAA CTGTCACCAT TAGTTCCCTG 001120
001121 AACTTACAGT TCCTGTAACA GTAAATGAAA TTAAAATTCC TATCTAGAGG AAACCTATCA TGGTTTAGGT TGTTGCAGCT 001200
001201 GTAAAATTTT TTTTAAAAGA CTAAAGGATG GTCTACCATT TGACTCCAAA AACCCCTTTT CTATGTCTTG TTCTACAATA 001280
001281 ATTGACTTAT TCTCTTCCAG GAAATGCATA ACATTATTTA AAAAGAAGAA TGATACTAAT TATATAATTG CAATGTAACA 001360
001361 GCGTACTATT GTCGATAACC ATTACTATTG CAAACTAACT AGGCTCCAGG CCCTTGACCT GTGCTTCATC GTGGAATTCC 001440
001441 TACCACTGCA TATTCCTCCC TAGGCTTTAA GCGTGAAGGC AGACACATCA TATTTGGCTT AACACCTGCC GTAACACTGG 001520
001521 GTACATAGTG TAGTGAAATT AATGGACGCT GGATGACTTT GCTTGCTTTA CTGGTGAGTC AAGCGTAGAG TAGTTACTTG 001600
001601 CTTGGAGCGA TAGCAGGCCA AATTCTGACT CCAGAGCCCA TACTTTTCCT GTTACCATCC ACTGCTTCCA CCGTCACCAC 001680
001681 AAAAGAAGAT GTTTGAGACT GGTCCTTTGA AATCTATGAC CAAATTTGTG TGACTCTTTG AGGTGGCAGG ACATTGTATT 001760
001761 ACAGCTTTTT CCACAATTCT TACTGAACTT TTTTCATTAT CATCTAATGT CTAGTGTTTT AGTAAATGTA GTTTCTTTTT 001840
001841 TCTTTCCCTT TCTTTTTTTC TTTTTTAAGA GGTGGGGTCT TGCTCTGTTG CTCAGGCTGG AGTGCAGTGG TGTGATTATA 001920
001921 GCTCATTTTA GCCTTGAGCT CATGGGCTCA GGCAGTTCTC CTACCTCAGC CTCCCACATA ACTGGGACTG CAGGCATGTG 002000
002001 CCACCATGCC CGACTACTAA AAATTTTTTT TTGGTAGAAA AACAGGGTCT TACTGTGTTG CCCAGGCTGG TCTCAAACTC 002080
002081 CTGGCCTCAG GCAGTCCTCC TTCCTTGACC TCCCAAAGTG CTCGGATTAC AGGTTTGAGT CACCTTACCT GGCCTGAATA 002160
002161 TGGTTTCTTT AAGGTTCATG TTGAGGGCTA CATTTCAGGC ACATGCGTAT TTCCGAGAAG CATAATTTAC CCCATACTGT 002240
002241 AGACACAGAA AGGGAGACAT TGGGGAAGTA ATGTGCTGCC CATGATGATT CCGCAGTTTG TAAAAGTCAT GAATCCAGTT 002320
002321 TTCCTAACTG CTACTCAGTT TTCTTTACTT ACGCCATATG ATCAATTTTT AGATAACAGA CGTTTTAATT TAATTTAATT 002400
002401 TTATTTTTGA GACAGGGTCT TGCTTTTGTC ACCCAGGCTG GAGTGCAGTG GTGTGATCAC AGCTCACCGC AGTTCTGTGC 002480
002481 TCAAGTGATC CTCCCGCCTC AGCCACCCAA GTAGCTGGTA CTAGAGGTAT GTCACCACAC CTGGCAAATT TTTGTATTTT 002560
002561 TTTTTGTAGA GGTGGGATTT TCCCATGTTC CCCAGGCTGG TCTTGAACTC CTGAGCTTGA GCAGTCTGTC CACCTTGGCC 002640
002641 TCCCAAAGTG CTAGGATTAC AGGTGTGAGT CACCACGCCC GGCCGACAAC AGTGATTTTA AATGGATTTG TGTTTAACAG 002720
002721 TAAAAAACAA TTATTTCACA GTATCCAAAA AGAAGAATAT CTGAGACTTG GGTGAGGGGA AAACCAGCTG TATAAACTGA 002800
002801 GAGCTGTACC TTGTTCCTGT ATGGAAGTAT GGAATATGGG AAAGATATTA GTTATTTTTA AACTGATTTT TATTACTAGA 002880
002881 CCAATTAAAA TCCCACTGTG AAAAATAAGC CATAATTTTG ACTATAAAAT GAAAATAATT GAGGAATTGT CATATCAATA 002960
002961 TTAAAATATA CTTTAAGGCT AAAATAATCA AAACAATTTA CAAAAGTTTA TAGGTTAGTG GAGGCAGACA TAGTTTCCAA 003040
003041 ACAGACCCAG GAGAAGTTAT ACGAATTTAC CATGTGATAA GGATAATCCA GCAACCCGGG GAGAAAAGGA AAGCTTATTA 003120
003121 CAAAAGCTTG TAAAAAAGCT TATGTAAAGA GTTTTTCTCC ATGATAAGAA GAGAACATGC TCCGTTCATT AGTGATTGTA 003200
003201 GTAATTCTTT CTTTCTTCTA CTTTCCTGTT TTTTTTTGAG ACAGAGTCTT GCTTTGTTGC CCAGGCTGGA GTGCAGTGGT 003280
003281 GTGATCTCAG CTCACTGCAA CCTCTGCCTC CTGAGTTTGA GTGATTCTCC TGCCTCAGCC TCCTGAGTAG CTGGGATTAC 003360
003361 AGGCATGTGC CACCATGCCT GGCTAATTAT TGTATTTTTA GTAGAGACGG GGTTTCACCA TGTTGCCCAG GCTGGTCTTG 003440
003441 AATTCCTGAC CTCAAGTGAT CTGCCTGCAG CGGCCTCCCA AAGTGCTGGG ATTACAGGTG TGAGCCACCA TGCCCAGCCT 003520
003521 CTTTGTTCTT CTTTTATACT TTGTACACCT CTTAACCCTT CTTTGGCCAA GATCTGGGGG CTTTAGCAAT GACAATTTCA 003600
003601 ATTATACTTT CAGTTGAAAG ATTTTTAAAA GTAAAACGTT AGCATTGGAT CTGGAGAATT TTGCTAACTG AGATAATTAA 003680
003681 TAGCTGGGCT GGTGGTGATA GGGTTTGTGT GTTTTTGAGA GAGAGAGAGA GAGAGAGAGG AAGAGACAGA CAGAGATGGA 003760
003761 AATATAAAGA TCATTCTTCC ACTGTTATAT GTGTTTTTTC CCCTTTAAAG GAATAGGCAT TTGAATTTCC TCTCTGTTGT 003840
003841 CAGGTGTTCT GACTTGGGTA CATCAGCTCT TACTGAGTGC TTGAATGTTC AGGATTTCTA TGACATATCT CAATCTAATG 003920
003921 AAAATCTGAC TGTGAAATGT CTATATATCT CCCCAGGCTT CGTTTTCTTG GTTAAATGAG AAAAGTGCTC TTATTTCAAA 004000
004001 TGTTGGAAAG TAGCTCTACC TTTTTCTGGA AAAAAAAAAA AAATAAAAAA AAAATAATAA TAATAATAAT AATAATAAGA 004080
004081 TGGGAAATGT CTGTCCCACA TCTAAAGCAG TTTTGATCTT TAGCATATTT AGTTTTTTTT TTTTTTTTTT TCCTGGCAGC 004160
004161 AGCTGAAAAT TAAGAGGATC AAAGTTATGT TCCTATAAAA GACTTTTTTC CTGTCAGTGC TTGAAGGCAT TGTCTGACTC 004240
004241 CCCCCACCCC CACGTTTTAA AAGCTGATTG CTTATCTTAT TCAGGTAGAA TTTAATTTCA TGCCCATCAT ATTCTAATAG 004320
004321 AACAAAAATG ATACTTAGTT TCAGACTGTG GATTTTAGTT TGAA
[back to top]

Predicted Small Protein

Name NONHSAT087247_smProtein_3509:3616
Length 36
Molecular weight 4110.7296
Aromaticity 0.228571428571
Instability index 45.2685714286
Isoelectric point 6.49493408203
Runs 5
Runs residual 0.0382566585956
Runs probability 0.0175234057587
Amino acid sequence MPSLFVLLLYFVHLLTLLWPRSGGFSNDNFNYTFS
Secondary structure LLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLEEEL
PRMN HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
PiMo i??????????????????????????????????