NONHSAT087255

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT087255

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4162 nt

Genomic location

chr22+:46402496..46406657

Exon number

1

Exons

46402496..46406657

Genome context

Sequence
000001 AGAGGAGTCC AGACTCCGAT CCCAGCTCCA CTGCTGCCTC CCGCACGCCT GGAGCCAGCC CGGCCCTCAT CTGTGCACGC 000080
000081 AGGGTGTGCT GCACCCCACC AGGCATCTCC AACTCGGAGA TTCAGCTGCA GCCCTGGCCG TCAGACCCAC GGGCCCTGAA 000160
000161 GTCCAGGGGG CCCTCTCGCC CGCCTCCTGT CTGCAGATGG GGAAATTGAG GCCCAGCCAG GGCAGGGGAT TTGCCGACGT 000240
000241 TTCGCAACAA ATTCGAGTCA GAAATAGGCC CAGCTGGGCC TGCCGGCGCG GAGGCCCGCT CGGGACACTG CTGGCCAACG 000320
000321 CAGGGCCCAG CACGGTCCCA GTCACACCCA CAGCAGGGTC CTGCCAGCCT TCTCCGCTCT CCCCTGGGGG AAGTGACCCT 000400
000401 CCTCCACCTC CCAGAGCCCA CGTGAGTCCG CAGGAGGCCC CCCTGGGCCA GGTGCCAGGT GCCGAGTGGC TGCCTCCAAC 000480
000481 TCGGGGGCTG CTATGCAAGG ATGTTTCCAG TTCTCCGGGT CCTTCCTTCC ACCTGGGAGG TCCGGGGCTG CCGGGCCATG 000560
000561 CTGGTCCCTG TGGCCCTAGG GCCCGCCCAG CGCAGGGCCT GGCAGGGAGA GGGGGAAACG TGGGTGAGGG AAGTGAGTCA 000640
000641 CCCCTTGGGA CACTTCCCTG CTCAGTTCCT GCCTCTCAGC AGCTTCTGCG AGGCAGGTCA CACCTGCAGG GGAGCCTGGC 000720
000721 AGCGCTAGGA GAGGCAAGGG GTGGGGGTGC CGCCTTTTCA TGGGGCCAAG AGGGGCCCTG AGAGGGACAC CGGGTGGACA 000800
000801 GCCCCAGGGG CCTCCTTGCT CGGCCAGCCG GCATCTCCCC CTGCTCCCAG CATAGGAGGG CCGGTGGCCT GAGTGCTCTG 000880
000881 CTCCGTGCCC GGAAAAGACT CATGTTCCAG GAAAAAGCCG CTTGGCAGGT CGGAGCAAGC TCATGGTGCT GTTCCCAGAC 000960
000961 CCGATGCGAT GCGTGTGGAG GGAGGCCTGC CCTTGCCCCC AGGGCTGCAG GGCGAGAACA GACCTTGATT CCTGCTATAA 001040
001041 CCCTGGGCAC GGCCTCTGTT TCTCCGCGTG TGCCCGGGGG CGGCGTGTTC TCAGGGCAGG GGCCTCTAAG GATCAGAGTG 001120
001121 AGGCTGCAGG CCCAGGCTGA GGCCTGCACC ACCTCGGCCG GGAGATGAGT AAATGTCTGG GTCCCCCTGG CCACTCCAGA 001200
001201 GTGAGGCCGC CAAGCCTCCG GCCTGAAGTC CGGCTCCTGT TCTCAGCCTG CCAGGCCCTT GTGCGGTGGC GTCGGGCAGG 001280
001281 CAGGGCAGGG AGGCCACGGC AGCCATCTTC CCGGGGAGCT GGGGCCTGGC CAGCAGCGTT TCCCAGTGGC CTCCTCCTGT 001360
001361 GCTCCGAGCT GCATTACCTC ATCGGGAAGC CATTCCAGAA AGGAGCTGCG GAGCCCCTGG GAGTGGGAGT GGGGAGAGCT 001440
001441 GCGTCAGCGC CCTCCTGGCA GCCTCGGTGC CAGACGAGGG CAGGCGTCAC GCCTCCGGGT GTCTGCCTGC CGAGCGACTG 001520
001521 CTGGGAGAGC AGCTGGCTTT TGTCAGCGTT TCGGGGTGAC CGGGCTGGGC TGCAGCAGGC AGGTGGCGTG GCACGGCCCA 001600
001601 TGGCCGGCCA GCTACCAGGT GGGCAGAGGA TCTATTTCAA GAGCCGGAAC CAAATGGCCA GGCATGAGGG GAAGCCAGGT 001680
001681 GCAAACTCAG TGGCAGAGAC CAAGCCCTGA CCCCGCAGTC CCAGGCCTCA GTTTCCCCTC AGGCCAGCCC TCCTCCCAGC 001760
001761 ACCTGTCCTC TGCTTCCTAT AGCCACAAAG AGCACCAGAC ACGAGTGAGC AGGTGACTAC ACTCCCTGCT GCCCGCTGGT 001840
001841 GTAAGCCAGA GGCCCTGCCA CCCACAGCTG GCCTCCAGAG GCCTTTCTGG ACCACAGGGT CAGGGCTGAG AGGGGTGGGG 001920
001921 GTGGCAGGGG CAGCTGAGGT GCTGGAGAGG GAGGACAAGC TTCCTGCCTG TGGAGGAGAC AAGGGCAGCT CCCAACCCTG 002000
002001 CTCCTAGCCT TCCTGCCAAG TTTGGATTCC AGAAACACCT CTTGGTGCCT CAGTTTTCTC ATCTGTTTTG TGTGTGTGTG 002080
002081 TGTGTGTGTG TGTGTGTTTT GTAGATAGGG TCTTTCTCTG TCACCCAGGC TGGAGTGCTG TGGTGCGATC ATGGCTCACT 002160
002161 GCAACCTCTA CCTCCTGGGC TCAAGCAATC CTCCCGCCTC AGTCTCTCGA GTAGCTGGGA CCACAGGTGC ACACCACCAT 002240
002241 GCCTGGCTAA TTTTTGTTTG TTGGTTCATT TTTGTAGCGA CAGGGTCTCC CTATGTTGCC CATACTGGTC TCAAACTCAG 002320
002321 CTCAAGTGAT CTGCCCGCCT CAGCTTCCCA AAGTGCTGGG ATTACAGGCA TGAGCCACTG CGCCCAGCCC GGCTTTCTCA 002400
002401 TCTGTAAAAT GGGTTGACAA TGCCCACCCA GATAATGGTT GAAAGGACTC GTGAAACCAC GTAGGAGGCA CAGGCAGACA 002480
002481 GGCACTTGTG GGGGTCCATG AATGAGCCTC AGTGCCAGCT CCCCCAGGCC AGCTTCCAGC CTTCACACTG TCTGGGCCAG 002560
002561 AGGAGTCTTC CTAAAACAGA GGACTGTGTG GAGCACTTCT CCACAGAGAA GCCTCTTGCC TCAAGTCAGT GACACTGTCC 002640
002641 TCCAGCCCCA CCCAACTGTA CATGTGCCCA AGCTCATCAT ACTTTTCCTC AAACCCTGTC TGTCAGGAAA ACTCCTACTC 002720
002721 ACCCCGCAAA ACTCCATGTG AGATGCCCAC TCGCTCATCT AAAATGCCTC ACAGGATTAC TCTAAGAACC AAAGAAGAAT 002800
002801 ATACATGTGT GAACACATGG GCATGGTTGC CAAGTGAGGG GCATCACATT CATGACTGTC CCCATTACTT ATTAGAGCAA 002880
002881 CCATAACCAA GAATGCAGCG GTGGGCAGGA AGTGTTACTG GGGATAGGAA TTAGCAGGAA GTTTTTCTGG CTTGGAATTT 002960
002961 AAGCCCAACT TTGGCAGATG GCAGAATTTT CAGAGAGGAA AGGAGGAAAT TGGAGGCTAG TGTGGCAGTG TTAAATATGG 003040
003041 CTGCAAAGTC CTTGGTCCTT CTCCCATTGA AGCGTGGGCC CTATGGCCTC TCCTCTTGAA TCCAGGTGGG CTTGTGACTA 003120
003121 CTTCAGCCAA GACAATGCGG CAGAAGTGTT GTTGGGTAAC TTCCAAGGCT CACTCATAAA AGACCATATG GCTTATAACT 003200
003201 TGGAGTCCTA AGTTGCCATC TAAGAAGGAA GTTCAACAAC CTGAGACTTC CATGCTGTGA GGAAGCCCAA GCTCCATGAG 003280
003281 GAGTCACATG GGGGTGCACT GGTTGACAGT TCCAGCCTTC CAGCCAGCCC AGCCCAGGCA CCAGCCATGC GAATGCAGAA 003360
003361 GCCATCTTGG AAGTGGATCC ACCAGCAGCA GGTGTCCCGG CCCCCAGCCA TTTGAGTTGT CTCGGGTGAG CCACTGAACC 003440
003441 ACACAGAGTA GAGTGGAGTT GTCCCTACTG TGCCCTTTCA GGACAGAATT CCTGAGCGTA ATAAAGTGGC TGTAGTTTTA 003520
003521 GTCACTGTTT TGGGGCTGTT TGTTATGCAG CACTAATTAA CTAGAACAGG TGAGAAGATC AGAACTTCCT GGTGCTTAAA 003600
003601 GCCAGCCACA CAGCCCCTCG AAGCAAGATT GTCTTAATCT GGAAGTCAGT CCCAAGAACA GGTTCTCCCC AGTGCTCTCA 003680
003681 GCATTCCCCA CCCCAGCCTG GCCCATAAGC AGTGCTTGGG GCATGCGGGG TTGCTGGAGC ACTCCCAAGC CACTCCCAAC 003760
003761 ACCTGGAAGG AGCCTCCCCT CCTCAGGATT CTCAGCGGCG TTTGCAGCTT GGATGACTGT GGACCCAGAA GCTCTGGGGA 003840
003841 GTTATCCAGG TTCTATGTGG CATGAGTATC CCTCTGTGCC TCAGTTTTCC ACCCATGGAA TAGGGCACGA AACTCATAAT 003920
003921 CTCTCTGATC CCTCTCGGCT CCTACCCCAC CTTCCTGGAG GCCTTGTTCA TTCTCATGTG TGTCTCCCCC ACATCCTCTT 004000
004001 ACCCATGTGA CTCTGCCTGC CATGAAAGCA GGAGTCATGA CTGCAGTCTC ACGGTTGAAT GTTCTGCACC TGGCACCCAG 004080
004081 CCTAGGCCAG AGGATGGATG CCACACCACT GGTGTTTTCT GAATGAATCA ATGAGTCAGT CAATAAATGG AGTGAATGAA 004160
004161 TG
[back to top]

Predicted Small Protein

Name NONHSAT087255_smProtein_3722:4009
Length 96
Molecular weight 10275.6589
Aromaticity 0.0842105263158
Instability index 57.3136842105
Isoelectric point 6.68609619141
Runs 11
Runs residual 0.0132615002072
Runs probability 0.0251079956963
Amino acid sequence MRGCWSTPKPLPTPGRSLPSSGFSAAFAAWMTVDPEALGSYPGSMWHEYPSVPQFSTHGI
GHETHNLSDPSRLLPHLPGGLVHSHVCLPHILLPM
Secondary structure LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLHHHHLLLLLLLLEELLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLEEEEELLLLEELLL
PRMN -
PiMo -