NONHSAT087255
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087255 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4162 nt |
Genomic location |
chr22+:46402496..46406657 |
Exon number |
1 |
Exons |
46402496..46406657 |
Genome context |
|
Sequence |
000001 AGAGGAGTCC AGACTCCGAT CCCAGCTCCA CTGCTGCCTC CCGCACGCCT GGAGCCAGCC CGGCCCTCAT CTGTGCACGC 000080
000081 AGGGTGTGCT GCACCCCACC AGGCATCTCC AACTCGGAGA TTCAGCTGCA GCCCTGGCCG TCAGACCCAC GGGCCCTGAA 000160 000161 GTCCAGGGGG CCCTCTCGCC CGCCTCCTGT CTGCAGATGG GGAAATTGAG GCCCAGCCAG GGCAGGGGAT TTGCCGACGT 000240 000241 TTCGCAACAA ATTCGAGTCA GAAATAGGCC CAGCTGGGCC TGCCGGCGCG GAGGCCCGCT CGGGACACTG CTGGCCAACG 000320 000321 CAGGGCCCAG CACGGTCCCA GTCACACCCA CAGCAGGGTC CTGCCAGCCT TCTCCGCTCT CCCCTGGGGG AAGTGACCCT 000400 000401 CCTCCACCTC CCAGAGCCCA CGTGAGTCCG CAGGAGGCCC CCCTGGGCCA GGTGCCAGGT GCCGAGTGGC TGCCTCCAAC 000480 000481 TCGGGGGCTG CTATGCAAGG ATGTTTCCAG TTCTCCGGGT CCTTCCTTCC ACCTGGGAGG TCCGGGGCTG CCGGGCCATG 000560 000561 CTGGTCCCTG TGGCCCTAGG GCCCGCCCAG CGCAGGGCCT GGCAGGGAGA GGGGGAAACG TGGGTGAGGG AAGTGAGTCA 000640 000641 CCCCTTGGGA CACTTCCCTG CTCAGTTCCT GCCTCTCAGC AGCTTCTGCG AGGCAGGTCA CACCTGCAGG GGAGCCTGGC 000720 000721 AGCGCTAGGA GAGGCAAGGG GTGGGGGTGC CGCCTTTTCA TGGGGCCAAG AGGGGCCCTG AGAGGGACAC CGGGTGGACA 000800 000801 GCCCCAGGGG CCTCCTTGCT CGGCCAGCCG GCATCTCCCC CTGCTCCCAG CATAGGAGGG CCGGTGGCCT GAGTGCTCTG 000880 000881 CTCCGTGCCC GGAAAAGACT CATGTTCCAG GAAAAAGCCG CTTGGCAGGT CGGAGCAAGC TCATGGTGCT GTTCCCAGAC 000960 000961 CCGATGCGAT GCGTGTGGAG GGAGGCCTGC CCTTGCCCCC AGGGCTGCAG GGCGAGAACA GACCTTGATT CCTGCTATAA 001040 001041 CCCTGGGCAC GGCCTCTGTT TCTCCGCGTG TGCCCGGGGG CGGCGTGTTC TCAGGGCAGG GGCCTCTAAG GATCAGAGTG 001120 001121 AGGCTGCAGG CCCAGGCTGA GGCCTGCACC ACCTCGGCCG GGAGATGAGT AAATGTCTGG GTCCCCCTGG CCACTCCAGA 001200 001201 GTGAGGCCGC CAAGCCTCCG GCCTGAAGTC CGGCTCCTGT TCTCAGCCTG CCAGGCCCTT GTGCGGTGGC GTCGGGCAGG 001280 001281 CAGGGCAGGG AGGCCACGGC AGCCATCTTC CCGGGGAGCT GGGGCCTGGC CAGCAGCGTT TCCCAGTGGC CTCCTCCTGT 001360 001361 GCTCCGAGCT GCATTACCTC ATCGGGAAGC CATTCCAGAA AGGAGCTGCG GAGCCCCTGG GAGTGGGAGT GGGGAGAGCT 001440 001441 GCGTCAGCGC CCTCCTGGCA GCCTCGGTGC CAGACGAGGG CAGGCGTCAC GCCTCCGGGT GTCTGCCTGC CGAGCGACTG 001520 001521 CTGGGAGAGC AGCTGGCTTT TGTCAGCGTT TCGGGGTGAC CGGGCTGGGC TGCAGCAGGC AGGTGGCGTG GCACGGCCCA 001600 001601 TGGCCGGCCA GCTACCAGGT GGGCAGAGGA TCTATTTCAA GAGCCGGAAC CAAATGGCCA GGCATGAGGG GAAGCCAGGT 001680 001681 GCAAACTCAG TGGCAGAGAC CAAGCCCTGA CCCCGCAGTC CCAGGCCTCA GTTTCCCCTC AGGCCAGCCC TCCTCCCAGC 001760 001761 ACCTGTCCTC TGCTTCCTAT AGCCACAAAG AGCACCAGAC ACGAGTGAGC AGGTGACTAC ACTCCCTGCT GCCCGCTGGT 001840 001841 GTAAGCCAGA GGCCCTGCCA CCCACAGCTG GCCTCCAGAG GCCTTTCTGG ACCACAGGGT CAGGGCTGAG AGGGGTGGGG 001920 001921 GTGGCAGGGG CAGCTGAGGT GCTGGAGAGG GAGGACAAGC TTCCTGCCTG TGGAGGAGAC AAGGGCAGCT CCCAACCCTG 002000 002001 CTCCTAGCCT TCCTGCCAAG TTTGGATTCC AGAAACACCT CTTGGTGCCT CAGTTTTCTC ATCTGTTTTG TGTGTGTGTG 002080 002081 TGTGTGTGTG TGTGTGTTTT GTAGATAGGG TCTTTCTCTG TCACCCAGGC TGGAGTGCTG TGGTGCGATC ATGGCTCACT 002160 002161 GCAACCTCTA CCTCCTGGGC TCAAGCAATC CTCCCGCCTC AGTCTCTCGA GTAGCTGGGA CCACAGGTGC ACACCACCAT 002240 002241 GCCTGGCTAA TTTTTGTTTG TTGGTTCATT TTTGTAGCGA CAGGGTCTCC CTATGTTGCC CATACTGGTC TCAAACTCAG 002320 002321 CTCAAGTGAT CTGCCCGCCT CAGCTTCCCA AAGTGCTGGG ATTACAGGCA TGAGCCACTG CGCCCAGCCC GGCTTTCTCA 002400 002401 TCTGTAAAAT GGGTTGACAA TGCCCACCCA GATAATGGTT GAAAGGACTC GTGAAACCAC GTAGGAGGCA CAGGCAGACA 002480 002481 GGCACTTGTG GGGGTCCATG AATGAGCCTC AGTGCCAGCT CCCCCAGGCC AGCTTCCAGC CTTCACACTG TCTGGGCCAG 002560 002561 AGGAGTCTTC CTAAAACAGA GGACTGTGTG GAGCACTTCT CCACAGAGAA GCCTCTTGCC TCAAGTCAGT GACACTGTCC 002640 002641 TCCAGCCCCA CCCAACTGTA CATGTGCCCA AGCTCATCAT ACTTTTCCTC AAACCCTGTC TGTCAGGAAA ACTCCTACTC 002720 002721 ACCCCGCAAA ACTCCATGTG AGATGCCCAC TCGCTCATCT AAAATGCCTC ACAGGATTAC TCTAAGAACC AAAGAAGAAT 002800 002801 ATACATGTGT GAACACATGG GCATGGTTGC CAAGTGAGGG GCATCACATT CATGACTGTC CCCATTACTT ATTAGAGCAA 002880 002881 CCATAACCAA GAATGCAGCG GTGGGCAGGA AGTGTTACTG GGGATAGGAA TTAGCAGGAA GTTTTTCTGG CTTGGAATTT 002960 002961 AAGCCCAACT TTGGCAGATG GCAGAATTTT CAGAGAGGAA AGGAGGAAAT TGGAGGCTAG TGTGGCAGTG TTAAATATGG 003040 003041 CTGCAAAGTC CTTGGTCCTT CTCCCATTGA AGCGTGGGCC CTATGGCCTC TCCTCTTGAA TCCAGGTGGG CTTGTGACTA 003120 003121 CTTCAGCCAA GACAATGCGG CAGAAGTGTT GTTGGGTAAC TTCCAAGGCT CACTCATAAA AGACCATATG GCTTATAACT 003200 003201 TGGAGTCCTA AGTTGCCATC TAAGAAGGAA GTTCAACAAC CTGAGACTTC CATGCTGTGA GGAAGCCCAA GCTCCATGAG 003280 003281 GAGTCACATG GGGGTGCACT GGTTGACAGT TCCAGCCTTC CAGCCAGCCC AGCCCAGGCA CCAGCCATGC GAATGCAGAA 003360 003361 GCCATCTTGG AAGTGGATCC ACCAGCAGCA GGTGTCCCGG CCCCCAGCCA TTTGAGTTGT CTCGGGTGAG CCACTGAACC 003440 003441 ACACAGAGTA GAGTGGAGTT GTCCCTACTG TGCCCTTTCA GGACAGAATT CCTGAGCGTA ATAAAGTGGC TGTAGTTTTA 003520 003521 GTCACTGTTT TGGGGCTGTT TGTTATGCAG CACTAATTAA CTAGAACAGG TGAGAAGATC AGAACTTCCT GGTGCTTAAA 003600 003601 GCCAGCCACA CAGCCCCTCG AAGCAAGATT GTCTTAATCT GGAAGTCAGT CCCAAGAACA GGTTCTCCCC AGTGCTCTCA 003680 003681 GCATTCCCCA CCCCAGCCTG GCCCATAAGC AGTGCTTGGG GCATGCGGGG TTGCTGGAGC ACTCCCAAGC CACTCCCAAC 003760 003761 ACCTGGAAGG AGCCTCCCCT CCTCAGGATT CTCAGCGGCG TTTGCAGCTT GGATGACTGT GGACCCAGAA GCTCTGGGGA 003840 003841 GTTATCCAGG TTCTATGTGG CATGAGTATC CCTCTGTGCC TCAGTTTTCC ACCCATGGAA TAGGGCACGA AACTCATAAT 003920 003921 CTCTCTGATC CCTCTCGGCT CCTACCCCAC CTTCCTGGAG GCCTTGTTCA TTCTCATGTG TGTCTCCCCC ACATCCTCTT 004000 004001 ACCCATGTGA CTCTGCCTGC CATGAAAGCA GGAGTCATGA CTGCAGTCTC ACGGTTGAAT GTTCTGCACC TGGCACCCAG 004080 004081 CCTAGGCCAG AGGATGGATG CCACACCACT GGTGTTTTCT GAATGAATCA ATGAGTCAGT CAATAAATGG AGTGAATGAA 004160 004161 TG |
Predicted Small Protein
Name | NONHSAT087255_smProtein_3722:4009 |
Length | 96 |
Molecular weight | 10275.6589 |
Aromaticity | 0.0842105263158 |
Instability index | 57.3136842105 |
Isoelectric point | 6.68609619141 |
Runs | 11 |
Runs residual | 0.0132615002072 |
Runs probability | 0.0251079956963 |
Amino acid sequence | MRGCWSTPKPLPTPGRSLPSSGFSAAFAAWMTVDPEALGSYPGSMWHEYPSVPQFSTHGI GHETHNLSDPSRLLPHLPGGLVHSHVCLPHILLPM |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLHHHHLLLLLLLLEELLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLEEEEELLLLEELLL |
PRMN | - |
PiMo | - |