NONHSAT087313
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087313 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1330 nt |
Genomic location |
chr22+:46711934..46723213 |
Exon number |
3 |
Exons |
46711934..46712309,46719087..46719159,46722333..46723213 |
Genome context |
|
Sequence |
000001 TCAAGTGAAT TTGCAAGTAT TCCTGCAAAT AGCTCCCGGC CTCTGTCAAA CATCAGCAAG TCAGGCAGAA TGGGACCCGC 000080
000081 CATGCTGCGG CCAGCTCTGC CTGCAGGCCC TGTGGGGGCA TCCTCCTGGC AGGCCAAGCG GGTCGATGTT TCTGAGCTGG 000160 000161 CAGCGGAGCA GCTCACGGCA CCCCCCTCAG CATCCCCCAC CCAACCCCAG ACTCCGGAAG GTGGCGGCCA GTGGCTGAAC 000240 000241 TCCAGTTGCG CTTGGTCAGA ATCTTCTCAA TTGAATAAGA CTAGAAGTAT CAGACGGCGA GATTCCTGTC TAAATTCCAA 000320 000321 GACAAAGGTT ATGCCTACTC CTACAAATCA ATTTAAAATT CCTAAGTTTT CTATTGGTGA CTCCCCGGAC AGCTCAACAC 000400 000401 CAAAGCTTTC GCGGGCACAG CGGCCGCAGT CGTGCACGTC AGTTGGCAGG GTCACTGTCC ACAGCACCCC GGTTAGACGC 000480 000481 TCATCTGGGC CAGCACCACA AAGCCTGCTG AGCGCATGGC GTGTGTCAGC CTTGCCCACA CCCGCCAGCC GGCGCTGCTC 000560 000561 TGGCCTTCCA CCGATGACCC CCAAAACGAT GCCCAGGGCC GTGGGCTCTC CCCTGTGTGT GCCAGCTCGG AGACGTTCCT 000640 000641 CTGAGCCCCG CAAGAACTCT GCAATGAGGT AAGACACGAA GGTGGTAATA AATTGGTCTC AAATTCCTAG GCTTGCTGTC 000720 000721 CCAGACAGTG ACATACCTTT TTCTTGCCTT GCTCCAGGTT TTAGTGAAGT AAATAGTATT TGGAAAGTTT GTTTGTTTTT 000800 000801 TTTTTCATTG CAAAGAGAAA ATGCAATAGA CATGAGCATA GAGGAAAATT AAAGGTATTA CAAGGAAATA CTGCGTGTAA 000880 000881 TTCTCTGATA ATCAATTTGA AAACCTAATG GTTTTCTAAA ATTTGCAAGT TATTggccag gtgtggtggc tcacgcctgt 000960 000961 aatcccagca ctttgggagg ccgaggcagg cagactgcct gagctcagga gtttgagatc aacctgggta acatggcaaa 001040 001041 accccatctc tacaaaaaat acaaaaataa gctaggtgtg gtggcgtgca ctgtagtccc agctatttag ggggctgagg 001120 001121 tgggaggatc acttgagctc aggaggttga ggctgcagtg agctgagatt gccccgttgc actccagcct gggggacaga 001200 001201 gtgagacccc gtctgtaaaa attaaaataa ataaaataaa taaaataaaA TTTATCTAAA TTGACCCAGA ACACATGAAG 001280 001281 TAAGCCATAG CTGGAGCTCA GAAATGATTA AAGATTGAAA AAGGCACCTG |
Predicted Small Protein
Name | NONHSAT087313_smProtein_515:643 |
Length | 43 |
Molecular weight | 4471.959 |
Aromaticity | 0.047619047619 |
Instability index | 71.2523809524 |
Isoelectric point | 4.65704345703 |
Runs | 9 |
Runs residual | 0.038125376733 |
Runs probability | 0.0240534652299 |
Amino acid sequence | MACVSLAHTRQPALLWPSTDDPQNDAQGRGLSPVCASSETFL |
Secondary structure | LEEEELLLLLLLLLLLLLLLLHHHLLLLLLLLLEELLLLEEL |
PRMN | - |
PiMo | - |