NONHSAT087393
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087393 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1647 nt |
Genomic location |
chr22-:49808176..50051190 |
Exon number |
2 |
Exons |
49808176..49809684,50051053..50051190 |
Genome context |
|
Sequence |
000001 cgtgtgcggt ccctccccct cacgttctct cttcctctgc tccgccatga tgagaagcgc ctgcttcccc ttccccttcc 000080
000081 gccatgattg tgtttcctga gacctcccag ccacgcttcc tgtacagcct gcagaactCT GCAAGACCTT CCTCCAAGGA 000160 000161 ACCTGCTGCC AACTCGCCTG GCACAGACAT CCTGACATGA CACCACTGCT CATTCCCCAC TGGCACAGGA CCGGCCATCT 000240 000241 CCTCCAAGCC TGAGCTGCCT GTACAGCATC CCAAGCTCTG GGCGCACCTG GGGCAGCCGT GGCAGGAACG CCGTGGGATC 000320 000321 TGCTGAGTCC TACGAGGCTG CAGTGGGACC GAGTGGGAAC CATGGCCCAT GCAGAACTGC TTCTCCCTTG AAGAAGAAAC 000400 000401 ACAGGCTATT GGCTCAGCTG TAAAAGGCAA ACACAGGCTA TTGGCTCAGC TGTAAAAGGA GATCACGGCA TCCGCTTGGA 000480 000481 TGGGGAGTTG GTGCCAGCTT TCCTGCTACA AGAAAATTCA ATCCCAACTG CTACCCAGAC CCGCTGTGTC TGCACCACAG 000560 000561 CAGTGGGGAC CGAGGGCATG CCTGCCATGC CAATCCCGCA GAGGACTTTG CTGCAGCGAG ACAGCCCCTT TCTCCCTCCA 000640 000641 TGATAGAGTT TAGAAGCCTC CTCCTCTTGC TGCCACCGTG GGTATTTAGG TGAGCAGCTG TAGTTGCCGG GGAGGCCTGA 000720 000721 GCACAACACT TAACGCTGCT CCTGCAGTTT CATGGGCCAT TAACAATTTG CTAATATTGT TTTAGCTTGC AAATTAGTGC 000800 000801 AGCTCCGTGG GTAAGGAAAG GCTCTGTGGC TGTCATCAAT CAGATGGAAA TTCTCCATGC ATGAGATGAA AAACGATTTC 000880 000881 TAGCCTTTGA GGCTCAGACG GCAATTACTG TAACCAAAAA AAATGGGTGG TGGGGAGCCG GGGGGAAGAG AGCTCCTTGC 000960 000961 AAAGTCTGTT AGCAATTCTA TGAACTTTAT TTCTTGATGC ACGAGAGTGA AACTATGAGG ATTTCCAGCC AAGGGAACTT 001040 001041 GATTTTCTTA GTTACTAATA AAGTGACAAT CTAAAGGAGC CCTCTCCAAC TGACCTGCTC CCAGAAGGTG GGGAGAGAGG 001120 001121 ATGTCCGTGT GGCAAGAAGG ATGACAAAGC TGTGAGGACC TGGTGACTGT CTTTGCTGAG CTCCCAACTG GTGACGCTCA 001200 001201 CCAGGAGGAT GCCACAGATG GCTCTGCCAA AAGTGCAGAC AAACCTTGGC CTTGTTTGTT GGAAACCATG TTGCTTATCC 001280 001281 CCCATCCCTC CCACCTTTAA GCACCAACAT TTTTTCCTTT TAAATATTGA TACGAGACTG ggctgggcat ggtggctcat 001360 001361 gcctgtagtt ctaatgcttt ggaaatctga ggcaggagaa tcacttgatc tccagttcta gaccagcctg ggcagtatag 001440 001441 tgagaacccc atctctacaa aaacatttca aaaattagct gggtgtggta gtatgcactg tggtcccagc tgcttgggag 001520 001521 gctgaggcag gaggatcact tgagcccagg agatcaaggc tgctgtgagc catgaacgcc cctctgcact ccagcctggg 001600 001601 caacagagtg agaccctgtc tcttaaaata aaaGTGAGAC TGTTATG |
Predicted Small Protein
Name | NONHSAT087393_smProtein_1208:1420 |
Length | 71 |
Molecular weight | 8153.719 |
Aromaticity | 0.128571428571 |
Instability index | 56.6971428571 |
Isoelectric point | 7.75482177734 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0633084064457 |
Amino acid sequence | MPQMALPKVQTNLGLVCWKPCCLSPIPPTFKHQHFFLLNIDTRLGWAWWLMPVVLMLWKS EAGESLDLQF |
Secondary structure | LLLLLLLHHHHLLLLEEELLLLLLLLLLLLLLLEEEEEELLLLLHHHHHHHHHHHHHHHL LLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiii iiiiiiiiii |