NONHSAT087561
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087561 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2562 nt |
Genomic location |
chr3+:239326..290282 |
Exon number |
3 |
Exons |
239326..239775,286296..286375,288251..290282 |
Genome context |
|
Sequence |
000001 GAAAATGCCG CCAGCCTGGA GCGGGGAATC CATGGACCGT GGGGTTGTGG GGTTGGGGAG CACGAAAACC CAGAGAGGGG 000080
000081 CTAGAGCTCC ACCTCCCCAG ACCGCCGAGG GGCGAGAGGG CGCGCCGGGG GCCGTGGTTG CCATGGCTCC TGGTAGCGGA 000160 000161 GCCCGGGGGG CTGGAGATGC CGGTCGCGGA TGGTCCCTTC TTCCTCTTTG TGCCTCTCTC TTTCTCTCGC TTTTTTTTTT 000240 000241 TTTTTGGAGT GTGAGTGTGC GTGGGGAGGC AGCACGGAGA AAGTGATTAA TTTGGGGAGC AGGGATTGGA GCCGGGAGGC 000320 000321 TGGGGAAAGC CAGCCCCTCC GTTCCCACTC TCCGGGCTCG CTGCGAGCCA CAGTGTCTCA GCCAGGGGCA GGGCCGGGGA 000400 000401 ACTCCTGCGA AAAACCACGG GCCGGAGGAG CAGCAGCCGC GCGGGCCCAG GTGCTGTAAA CTGCAAACCA TAATCCTGTC 000480 000481 TTAATACTGC AAACAAATCA TAGTGGAACT AAGGGGAACT TAATTTACTG AATCTCTTGT TTGGAAATTT CCTCCCAGAA 000560 000561 TACCCAACCT CTCAAGAATT TTAAAACGAT GGAGTAAAAT AATCTTCAAG CTCTGATTAG ATTACAACAT ATGAATGCTA 000640 000641 ATTTTGTTTT TACAGGTTTC AACACCCAAA TTTATCTGAA CTTAGGGCAC AATAAGCAGT TTAACTGTTA GAAATCTTAT 000720 000721 GAGATTGAGT TTGTGCCTAT CAGATGAATA CATATTTGTA TATAACATTT CAATTATTGC TACATTTATG TATAATTTAT 000800 000801 CCAAAAGCGA TGTTATCCAT GCATCTTAAC AGAAGGCTTA AGTAGTTGAA TGACAGGGAC TACATTTTTG CTGCAGAAGA 000880 000881 TCATGATAAA ACATGTGCTG TGTGGTCACC TTGGGTAATG TGCCGAGACT GCTTGATGGT ACTTATCTCT ACACACTGCA 000960 000961 TCTCATACTG ATTTATGGAT TTGGATGACT TATTTTATGT CAAAGACATA AAGAGAGTAG AGAAGAGAGA ATAGTATTTT 001040 001041 CATTTCAGTC TTAAAAAAGT TCTATCCTAT GAGATGTTAA CAGCTGCCTT CTCTTGGTGG TCTGTGAAGT TTTTATAAAG 001120 001121 ATATTGATTA TTTTCCAATG ACACACAAAT CTACTGCTAG AGACCATTCA AATGCTTAGT TACACCAGGG CTTGGCTCCT 001200 001201 GTACCCTGAG GAGGACACGA TTAACCAAAT CCTCCTTTTT AAATGTTCTC AGGACAATGA GCTGCACATA CGGCACAAAT 001280 001281 GCAATTTGCT TGACCAATCT TGCCTCTGTC TCCTTCTATC TCCGTTTACA TGCTTCATGC TCAGTTGAAA TTAATTCTCT 001360 001361 ACACATTGGT CTCATGAACA CATCTTTGAG AGCAGAGTTC AAGTTAAATT TTTATTTTCA TCATTACCTC TGAGAACACA 001440 001441 ATCTGGGGCA TATTAGACGC TTTGTAAGTG TAGAGGTGGG GAGAAAGAAG AAGAAAGAGA GGAACAGAAG GAGGGAAAGA 001520 001521 TTTTCCTGAT AGATCACTTT CTGGACACTT TCTGTGCTGA GAAGTTCTGA GATTGCCTCT CTGGATCCTG CTATCTTGGC 001600 001601 AGTCTTGCTA AGAGTTTCCA TTTACACTTA AACATGGTTA CTGATGCGTC TTAATGTTGC CTTAACTATC AGGTTTCTGA 001680 001681 TAGCCCCACA TAGCCAAGTG GGACCCTGGT CAAGAAGTTC ACCTCTGTTA AATAAATATG CATAGATTTT CAACATCTCT 001760 001761 TCACATGCAT TCAGAGGTGA TGAAAGATTC CACTGGATGC TAGAACATTG TGCATAAATA ATCGAAGTTG TATGCTCTTC 001840 001841 AGCAATGATG CTACCCCATA TCCTTTTTTT TTCTTTCCCA TGATATGAGG ATATGAGTGC AGCAGAACTA GCTCCATGCC 001920 001921 CTTGTCCCAG AATTAATCAT TCCTATCCAT ATTTGATGTC TTTACCTTTT AAATATTTAT GGGCTGTTAT GTTCCTTTCT 002000 002001 TGTTGTTCAC CCACTCTGGG GACATTCAGA AGCCTCACAT TTCTTCCTTA GCCAAACACC CCATTCCCTT CATCCTCTCT 002080 002081 CAGCTGTTCT TTGGATTACC TCCAAATTGC ATACATAATT TTGGTATTGA GGTGCCAAAA ATGCATTTGT TTCAACTGGA 002160 002161 GTTTTATTGA AGTTGCTTTT ACTCAAATCA AGTACACAAA TAAATTTGAT TTCCAAGGCA TGAAAATTCA GTTAGGTCTC 002240 002241 CGAAGGGAAG CTGAGGTATA CTTATATTTC ATTATAATGC TACAGGTAGA TTTTAAGTCA CTAGGAAAAT GACATCTCAA 002320 002321 AATCAAAAGA TTATAGAATG AGCACTATAT GAAGAATTAC ATTTTAAAGC ATAGGTCTGT GATCATTTTG TAGGTTTTTG 002400 002401 TTGTTACTGT CAGTCTATTG Gtttttatta ataattttat tgaggtataa ctgatacaca aacgacatat ttaatgtgta 002480 002481 caatttgatg agtttggaca tatccgagga ctcatgagac tgtcactgca atcaaggtaa taaatgtatt tattacttcc 002560 002561 aa |
Predicted Small Protein
Name | NONHSAT087561_smProtein_1256:1432 |
Length | 59 |
Molecular weight | 6617.59 |
Aromaticity | 0.137931034483 |
Instability index | 57.7210344828 |
Isoelectric point | 7.78594970703 |
Runs | 8 |
Runs residual | 0.0186623721106 |
Runs probability | 0.0414900194312 |
Amino acid sequence | MSCTYGTNAICLTNLASVSFYLRLHASCSVEINSLHIGLMNTSLRAEFKLNFYFHHYL |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHHHHLLEEEEEEHHHHHHHLLLHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |