NONHSAT087601
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087601 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3745 nt |
Genomic location |
chr3+:3190824..3195874 |
Exon number |
2 |
Exons |
3190824..3190917,3192224..3195874 |
Genome context |
|
Sequence |
000001 CCTTGATAAA ACAATTTTGT AGAGTGTAAT ATTTCTAAGA GGAAATGTCA CAGGGGCTAT GATGCAAGAA AGCCTCAGAA 000080
000081 ATGACTGCAT ACAGGAAATA ATCTCATCAT TTCCAAAGAT GTCTTCATGT CCCATCAATG ACATGCTACC AGACATATCA 000160 000161 GATTCCACAG GATAATGGCA CCAAGCTACC CAAGTAGATG TTTCTGGTAT TCTAGACTGC CGTTCATGCT TGTTTCCTAA 000240 000241 AGTATACTTA AAAGTTTCAA ATACAGTTTC ACTTAGAAAC TGCAACCCTC CAAGTAATGT TATGTTTACT TAGGTATTAA 000320 000321 TGTTATGTTT ACTTAGGTAT GTATCAGAGG CAATAATTTC CAAAGCAGAT CTTAGAATAT AACCAATTTG TTAGATAACT 000400 000401 TTATCTCTAT CACATCTGTT TACAAGCAAA GTATTACTTT GTCTGGACTT ATTTCATCTT CAGTGTCTGG GATCGTGGGC 000480 000481 AACAGAGCAG ATCGCGTTAA GCCCCAAAAT TTTTGAGGTG ACATGTCTTT TTTGGTGGCC GTAAACTTCC ATCCAATATG 000560 000561 GCTTGCACAG ATCTTACACT GGGCAACAGT CCAGGCATAC CTAAGAAATT AAGGAAAGAT ATCAGCTAAG GAAACATTTC 000640 000641 TGTACTCCAA GCCTATCATA TAAACCTATC ATGAAGACAG ACTTTAGAGG CAAATTCTAA GGATTAGAGA TTCTAAGTTG 000720 000721 AGATTTGATC CATACAGTTC CCTGAAACct aaaaacattt ctaaaaacat tttctaaTTT TGTAATATGT ATGACTTTTA 000800 000801 TGCTCTTAAG CCATGTTTAC ATTTTTCTTC TACTGCATAG AAATAAAGAG TAATCTTAAG AATTTCTTTA TAGAAATTGC 000880 000881 TGGTTGCCAA GACCACATTC TAACTTGTAC TGGCACCACA TTCTAACTTG TACTGGCTTT TCCTTTGTTG TATTGCAGTC 000960 000961 AAGTTAGAAA ACAGCAATTA CCTGCAGAAA TAATGCACTT CTGTCTGAGT TAAACTGGAT GGGCCAGGAA GGACACGTCT 001040 001041 CAAAAAGTAA ATATTTATAT TCTAAAATAA GAACGATTGT CAGATAATGC AACCAGAAAT ACAAACCATG GTATTTTGTT 001120 001121 CTTAAGATAA ACCATGTAAT TGCAACTGTT TCCTTATTTT TTTCCCTAGG TATACCATGC CACATTTATT TATAGTAACA 001200 001201 AATGTATTCT AGTTTTAGTC CTCACATAGG GTGCCAAGTA AGATAGGGCA ATCCAAGATA CATAGTCCTA ACCCCAGAGT 001280 001281 AGCATGTAAT CCCTTCTTAG CATCCCTCTT TGAAAACTGA AGATAGTACA GCTGAGGGAA CTGAACAGGT TCCCAGGATC 001360 001361 ATAGAGAATC ATTAAGCTGA AGCAAACAAA CAAAAGGCAA ACTAGAAGAA AAGCAGGATT CAATGGGTTC TGCACCTTCT 001440 001441 TAGTCTATCA TTGCTTTGTA AACATTCTCC GGTTTTACAT TACTACAGAA TATGGTCCAG ATATAAAGTT CTACTGGGTC 001520 001521 ATAAGACAGC TGATTTTCAG AATTACATGA CTGACAGAAA AAAACAATTT TGGATTTAAC TGGATACAGT AATCTGAGGA 001600 001601 CAACTGCAGT TGTCAACCTT TTCTTCCTTT CATTCAATGA TAAAAGATAC AAAAAGTGCA ACAGATGTTT CTAGCTATTT 001680 001681 GTGGAATGAA GGACATTTAA ATAAAttttt tttttttttt aaatagacag attctcactc tgtcacccag gctggactgc 001760 001761 agtggcacaa tcttggctca ctgcaacact cttgccttcc aggttcaaga gattcttgtg cctcagcatc ccgagcagct 001840 001841 gggagtacag acccctgccc ccatacccgg ctaatttttg taGCAAATTA CTCATTTGTC TGTCTACTTT TTATTATAAA 001920 001921 GATTGTGGCA ACTCTGCTTA GGACTCTGGA TTTTTCTGCC CAATTAAGGT AAAAAAAGAA AAAAAAAAGC AACCACCACC 002000 002001 ATAATATTAC CCAGGAAACC AGCTGTGTTC TGTAGAAGGC CGGCCTATCA GATTCAAGTT GCAAGCCTTA TACACAGTAA 002080 002081 GTGTCTCATG CACATATCCA TGAGGATTCA CATAAGCTGC CATCGGCCCA CATAAGGATA AACTAAAACA AAGAATCAAC 002160 002161 ATGGAGAACA CGTCAAAACG AGAAGTCTAA TTTTATTAAA TGCTTAGAAT TTTATTGAAG TTCACCAAGA AATGAGGTAT 002240 002241 GAGCTATACA GTTTTTAATC CTTCAGTTTT ATATAATACC AGGATCTTAG TATGAAAATG GGGTGGGGGT ACAGCTGGCA 002320 002321 GACAGGCCTG TTTTGTCTAA ATGTCTAAAT GTTTTCTGTG ATGACCCAAA GGAAATAGTA CTTGTTTTTA AAACCCTCCT 002400 002401 CAAGACAGAC ATTGTAAAGA ATATAAAACT CAAATGCTTC TAAAGGAGTC TGAGAGTGTA AGTGCAATGA CAAGGTCCTG 002480 002481 TGTGGTCATT TTGGGGCAGT TGATTATTTT GCAGAAAGCA GTTTCCTTAC CTTCTTGATT TACAACTGAT GGATTTGTCA 002560 002561 TAAAATGATT TTCAAACACT GTTATATCAG AGCATCAGTA TGTGTTCAGA AGCATGTCCT ACTTTGGCCC TATATGGCAA 002640 002641 AACTGATGAC TGAAATGTAA TTTCTGAAGC ATCTATGTTA GGGCCTAATT GAAGACAGTC TAATATATAG ATTGTCAACA 002720 002721 AGAATTAGGG GGAAAAGAAT TTCTCAGTTG TTTTACTTTA CCATGCTCAT TACCTGTGAA TAATCCCTGA CATGCATTGT 002800 002801 TGCTCTGAGT ACCCAATCTG GAAGATGGTC TTAGCAAAAG TGAGCTAATT CCCTATATTT CATTTGCTAA ATGTTTGTAA 002880 002881 CTTTAAGGTA CTGGAGGAAA GTTTATGGAA AACAGAAATA CAGTCTTCAT TATAATTCTG ATAAGGCAAG TATATTAAAA 002960 002961 ACGTAATAAA GACCTTACCT GAATATTTCA TTTTTGGTTG TTATTTCTGT TTCTTGACAT TGTTTACAGC AAAGGGAAGT 003040 003041 ACACTAAAAG ATTTGAGAGA AAAATTATTG GTAGGAAAAA CTGGCATTCA CTTTATCATG TAATCACATA GATCATCAAG 003120 003121 AAACTTACTT ATAAAGATAT TGCTCTCTCT GAATATCACA TTTTCCTTCC AAGCATTCAA AAACACTTTT AAAGATGGAG 003200 003201 CACGAAAGTC ACTGAAACTG AGATCTGCCA CATATTTACA TAAAACTAAA TGACCTTCTC TAGAGTAAAG GAATAGTGAT 003280 003281 ATATAACCTT GGATATTTCC ATGCAGAAAT CAAGTTATTT TTCACTAAGT TGATAAATGT ATTCATATTT GACAAACACA 003360 003361 AAACAATGAG TTTGTTTGTA AGATCCCAAT TGAAATCTGA ATTGCATGAC TACATTACTG GACTCTATAC AGAGCTCCAT 003440 003441 TGGCCCCAAC AGAGCATCCT AGTTCTCCAG CCTGAATAAA ACATGGGCAT CAAAAACATA TTCACTTTAC TCACTTTATT 003520 003521 CATAATGTCT AATTCACAGC GAAGTCGCTG GATAGCACTG CCAATTTTAA GGAGCTGAAT TCTCAATACA TCATCAATAG 003600 003601 GAAGACAAGC AGCTACTCTG TAAGAAAAAT CTTCAAGACA TGGTTTTTCA AGTTTTAAAC TTAGGAGTCA GATAAGCATC 003680 003681 AGAGAACTTA CAAATCGGAT AATATCCTTT TGAAATAAAC CCTTCTCTTT AAGGTTACAC ATTTT |
Predicted Small Protein
Name | NONHSAT087601_smProtein_812:925 |
Length | 38 |
Molecular weight | 4345.044 |
Aromaticity | 0.216216216216 |
Instability index | 75.1921621622 |
Isoelectric point | 5.42547607422 |
Runs | 6 |
Runs residual | 0.017604760724 |
Runs probability | 0.0469440028264 |
Amino acid sequence | MFTFFFYCIEIKSNLKNFFIEIAGCQDHILTCTGTTF |
Secondary structure | LEEEEEEEEEEHHHHHHHHHHHHLLLLLEEELLLLLL |
PRMN | - |
PiMo | - |