NONHSAT087735
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087735 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2147 nt |
Genomic location |
chr3+:8854087..8905521 |
Exon number |
4 |
Exons |
8854087..8854735,8859796..8860278,8883028..8883492,8904972..8905521 |
Genome context |
|
Sequence |
000001 CTTCATCTTT GGGTAGGGGT AAGGGAAGGG TTTATGTATG TGCCAGGCTG AGGCTCCGGA TTTGGGCAAG CAATGGTCAG 000080
000081 GCTCCACGGA GGCTCAAAGA TGGATGGTTT GAGACTTAGG GACGGATGAC AGGGAAGACC TCAGTGATGG GGTGATGTCT 000160 000161 GTTGAATGCA TTACTTGCTT TACATTTTTA AAAGCTGAAA GCTTAAGAGC TTATTTCTTA AGGCCGAGAA ACATGTTCTC 000240 000241 AGCTGCAGCA AAGCATTCTG CTCTGTCAGA TAGCCCAGAG TTGGTCCAAA ACAAAGGTGG GAAGTCGTCT GTGTTTGTGG 000320 000321 CCCCTCCCTG CCTTTCTGTG GGGCTTCCCC ACTTTCTGAT AGAGCCACCT GGCAGGTGCC CAGCAGTTCT CAACAGCCTG 000400 000401 TAGCATGGTC CTGGAGTCTC CAGCAAGCCA TCCAGGTGTC ATCAGCACTG GGCCTTGCAA CCCGGAGCCC TGCAACCCTG 000480 000481 TGGTAGAGCT GCACAGGGAT GGGGAGGATC GCGGGATTTA GAGTCAAGAG GACCTGTGTT CTGGGCCTGG GTCTTAGACA 000560 000561 AATCCCTGAT CCTGAGCCTG ATTCTTCAGC TATAAACAGC ATTTTTCATA CTTATCAGAT GGGTTTGGAG ATTGAGCAAA 000640 000641 TATGAAGGTT TTTCTCATTC CTCTCCAGCC TTCCCTTCCC TCCTCCTCAT TCGCAGCTAT CATCAGTCAT ACAGGGTTCC 000720 000721 CCAGCTGCCC AGTCTCAGCC CCCCACCTTG TTTCCATCCT AGTGTTATCA CAGTCTGTGA TTATTTTATG GGTTGTTGAC 000800 000801 TTATTTTCTG TCTCTCTGTC CCCTACGTTG TTGTAAGCTC CATAAAGGCA GGGACTTCAT TCAGGAACAT AGTCCCAGTG 000880 000881 CCTGGCACAG GGTAGTCACT CCATAAATAT TTGTTCAAGG AACCAACCAA CAAACTCACT TACATGGAGG TGATAGACCC 000960 000961 TTACTCTATT CCCTCCTGTG GTGTAACGTA AATTGCAAGA CGGAAGCCTC AGGAAAAGTA GGAATGAACT GGGAGGAGGG 001040 001041 AACTAAGATA TCCTGAGCAC TTTCTAAGGG CAAGGCACTG AGCAAAGTAA TTAAGGTACT TTATCCATGA CAATGGCCAT 001120 001121 GCATGATAGA CCATAACATC CTGCTGGTTA CTGATCATAC CTGTTGATGA ATTCCAAAAG AGCAGTTGCT ATCTCAAAGG 001200 001201 CAAGCAAGGT CATGGAGGGC AGGAAAAGCA CAACCCTGAA TGCAGAACGA GCACCACCAG GGTCTTGAAA CCTTACAAAC 001280 001281 AACTTCATAA ATCCTGCACT GGGCTTCCTT ATTGACCACA CAGGCTTCCT ATCAAACATG AATGAAGAGG AGGTGGACTG 001360 001361 TATTACAAAA TTAATAATGT AAGATGGTGG CTGCCAAAGC CATTCATAAT CGTAATTGCT TTTGCATGTG TTTTCTTGAA 001440 001441 AGCAACTTCA TATTTGTCAG CAACTAGGAA TGAAGGCGCT TCCTTTGATA CTTATATGTA CAGGCACAAA ATAGAGTTGA 001520 001521 ACTTTGCTGC ACACAATAAA TGTGTTGTGA AAATACGTGT TTGAAGTCTA ATAAACAGAC TTTTATTTTG CCCATGTGGG 001600 001601 CCAGTGGAGG CTCCCAAGAG GCTGTCCACG GGGACCATGT TAGGTCTCTT CAGGCTTCAA GGGCAAGTCT AAGGGGGGAA 001680 001681 GACCCCCATG ATGGTGTGCC CTTTTGTTCT GAAGCAGCTG CCTCCCTCTG CTTTGGTGCC AGGCACTGAA AACATTTTTC 001760 001761 TTGATTTAGG GGCCCCACTT ATACTTAACA TAGACAAGAG ATACCAGGAT GTGCTCACAT CATAGTGAGC ATACACAGCA 001840 001841 AGAACACGTA GTGTGTCCAT CAGTGTCCTC ATCACATTGC TCTCCTTGTG TTTGTTGCAA GGCTGCTGGT CTCCCTTCCA 001920 001921 GACTGAGCTC CTCATGGGCC AGGGCTGTGC TTGAGCTGTC CTTGAATTCC TAGTGTTAGA AAAGGGCACA GCCTGTGGGA 002000 002001 GCCCCGGATG AATGTGCTGG ACCAAATGGC AGAGCTAGAG TCCAAACCCT GCTCTCACTC TGTCCACACC CAGGGCTCTT 002080 002081 TCTATTCTAC TGTCAGTTCC CTGGCTGAGC AGAGCTACAG GCCCATGGGA GAGGACTGGG GAATGAC |
Predicted Small Protein
Name | NONHSAT087735_smProtein_641:835 |
Length | 65 |
Molecular weight | 6802.0873 |
Aromaticity | 0.078125 |
Instability index | 71.6375 |
Isoelectric point | 6.68585205078 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0817475229241 |
Amino acid sequence | MKVFLIPLQPSLPSSSFAAIISHTGFPSCPVSAPHLVSILVLSQSVIILWVVDLFSVSLS PTLL |
Secondary structure | LEEEEELLLLLLLLHHHHHHHHLLLLLLLLLLLLLEEEEEEELLLEEEEEEELLEEEEEL LLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooo oooo |