NONHSAT087736
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087736 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2534 nt |
Genomic location |
chr3-:8918877..8921466 |
Exon number |
2 |
Exons |
8918877..8921294,8921349..8921466 |
Genome context |
|
Sequence |
000001 CTATGTCTGT CACTGTGCTG ACACTGGGAA TACAAAGGTG GCCAAAGATC ATCTAGAACA ATGGTTCCCA GTGGGGTGGG 000080
000081 CAGAAAGATT TTGCCCCCCA GGAGACAGCT GGCAATGTGT GGAGGCCAGG GATGAGGCTA AACACCCAAC CCTCATGGAT 000160 000161 TAGTTTGCCA GGGCTGCCGT CACAAGATAC TGCAGACGGG GAAGCTTACA CAACAGAAAT GTGTATTCTC AGAATTCTGG 000240 000241 AGGCTGGAAG TCCAAGATCA GTAGGGTTTC TTCTTCGGCC TCTCTCCTTG GCTTCCACTC ATGGTGTCCT TGCATGGTCT 000320 000321 TTTCTCTGTG TGCACATGAC TGTGCAGGAC TGGTGTCCCG ATTTCTTGTA GGGACAGCAG TCATTGGATC AGGGCCCATG 000400 000401 CGTATGGCCT CATTTTACTT CAGTTACCTC TTTTTTAGAT AGAGGGCCCT ATCTCTAAAT ACTGTCACAT TCTGAGATAC 000480 000481 CGGCAGTTAA GACTTCCAAC ATATTTAGTG GTAGGGGTTA AGGGGCACGC TTTAGACTAC AACACTCCAC AGTAAAGAAT 000560 000561 TATCCAGTCT AACATGTCAG TTGTGCCAAG ACTGAGAAAC CTGTAATGTA AAGGAACTCC CAAGTCTACC TGAAAAGTAA 000640 000641 GGTCTAGAGC ATTTATTGAG CACTATCTGT TAGCACTTAG CATATGTTTA ATATTCATAC ATTGAAAGAA ATGTATGTTC 000720 000721 ATATCCATCT GACAAAGATT AAGGAACTTA GAGTAAGTAA TAGATCCAAA ATTGAAACTG ATAAACTTCT GGTTCTAAAA 000800 000801 TTCACCTTTT AGTGAAAATA CAGTTTCTCA CCAAACTTAC AGTAATTCAG AGTTATTAAC TCTTTCTACC TCCTCACTCC 000880 000881 CCTCAAAGTT ATAACATCTC CCATCGACAT CAGCTCAGAA TGGCAGTGAT GCTTATGGTT TGTGGGGGTG CAGGTGAGCT 000960 000961 GCTGGATGCA CTTTAGATGG CCTAGTATGC CAGGCCGTCC TTTCATCCTC TACTCTCGTC TTTCTTTTTC GACCTCATGT 001040 001041 TGAGGATTAC TGGTCTAGTT GAAAAAAGAA TTCATACACA TAAGACCATG TATATAATAG AGGGAGGTAT GCCTTTAAAA 001120 001121 ACAAAATTAT ATGGTAAAGA CTGATGTGTC AACAGGGATA GACAACATAG AGAAGGCTAG AACTGTTTCT GGAAAAAAAC 001200 001201 CCAGAAACAA TGGATTTCAA ACTTCTTAGC ATCCGATAAA AGAAAGTAGC AATTATTCAA ATGAGAAACA CTTCTGTCTG 001280 001281 TTATGTACAT ATTATGAAAG TATGAACATA AGAGGGAAAA CCACAACCAT TACATTTTTT ACCATTTCAG TAATTTTTTT 001360 001361 TTGGTTTTTA GTCTGTTTTT AGACATCCTT AAGAACAACT ATCTGAGGCT GTAAACAAGT ATTTACATTA ACACCCATGA 001440 001441 TACTGACTTT ATACTCCCTA CCTGCATTGA GACCTTAAAG GGGGCATTTC TCCATTCCTT CTGTGTATTT CTGGGTATCC 001520 001521 CCAGGTTCAG ATATTCAGAA TACAGATACA AGTCCATGCT TGCATATGTT GCTGCTCCCC CCGACAGACT TCTACCAGCA 001600 001601 TCTGCCCTCC TCACCGCTGC TCTGTCACGT GCACTGCGGC TGGCCCTGCT GGAAAGTCCT ACCTTGCCTA GGACGCCATC 001680 001681 CCCGATATAG CCCCAAGATG CAAACCTGCC AAGTGCTAGG GCAGCCCTGC CTTCCTGTCC ATTTCAGTCT CTTGGCCTTG 001760 001761 CTGTGTTCCA AGTGGAAATG GGAGTGTGCT TTCCTGGTTT GCTAGTGTAC TATCACCCGG ACCACAGCGT CCTGTGCAAA 001840 001841 AATTTGCTTC CTCTCTCTTC CCCTTTCACT CTTTCTCTTT TCTCTTCCCC ACCCCCTTTT TTTTCTCTTT CCCCTTACCT 001920 001921 TTCTTTCCTT TCCACTCTTC CTGTCCTTCC TTCCTTCAAC TATTAGGACT ATATGTCAAG TAATGTGCAA AACAAAGACA 002000 002001 GTTCCTGCCC TGATGGAGCT TGTAGATCAG AAGGGAAGAT GAGCATTAAG TAATTATATA GATTAATGTA CAACTGTGAT 002080 002081 GAGTGCAACA AAAGAGAGGT TCATGGCACT ATCAAACATG CAATGGACGG ATTTTGTTTT TGCCTATAAA CTCTTGCCAT 002160 002161 AGAAAGCTTG AAAATCAGTC CAGGGGGACA GCATTAATCA CCATGTTCTT TCCTTATCCC TGTCTTCCCC AAAATTCATG 002240 002241 TGTTGAAACT TAACAAGAGG TGGGAACTTT AGGATGTGAT TAAGTCGTGA GGGCACAGCT CTTATAGATG GGGTCACGGT 002320 002321 CCTTCTAAAA GGGCTTGAGG GAGTGGTTTT GTTTCCTTCC ATCCCTTCCG CCACATGAGG ACACAGTCTT CGTTCCCTCT 002400 002401 GGAGGACTCA GCAACAACAC ACCATCTTGG AAGCAGAGAG CAGTCCTCAC CAGACACGGA ATCTGCCAGT GCCTTGATCT 002480 002481 TGGACTTACC AGCCTCCATA CCTGTGAGAA ATAAATTTCT ATTGTCTATA ATTT |
Predicted Small Protein
Name | NONHSAT087736_smProtein_1565:1804 |
Length | 80 |
Molecular weight | 9103.9511 |
Aromaticity | 0.113924050633 |
Instability index | 61.4127848101 |
Isoelectric point | 8.64923095703 |
Runs | 12 |
Runs residual | 0.0116178255592 |
Runs probability | 0.0256727315551 |
Amino acid sequence | MLLLPPTDFYQHLPSSPLLCHVHCGWPCWKVLPCLGRHPRYSPKMQTCQVLGQPCLPVHF SLLALLCSKWKWECAFLVC |
Secondary structure | LLLLLLLLLLLLLLLLLLEEEELLLLLHHHLLLLLLLLLLLLLLLLEELLLLLLLLHHHH HHHHHHHHHLLHHHHEEEL |
PRMN | - |
PiMo | - |