NONHSAT087881
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087881 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
1025 nt |
Genomic location |
chr3-:10123005..10149915 |
Exon number |
9 |
Exons |
10123005..10123148,10127496..10127606,10128818..10128948,10130133..10130226,10130512..10130634,10131976..10132069,10133865..10133936,10134969..10135007,10149699..10149915 |
Genome context |
|
Sequence |
000001 CCCGGATGGT GGGACTGGGC CCAGGTTCCC ACCGCATCGT CCGCCTCAGC CAGAACCTTC TGGTCCCCGC CCCCGGATAG 000080
000081 GGACCCAGGA GGCCCAAGCC CCTTCTTCCG GCGGGGAGTG GGAGCCTCTC GCACTCTCGG CAGCTCCAGA CCCTCGGGAT 000160 000161 CTCCGTTTAC AGTTCAGGAC CTCAGCTGCA CTTTGGCGCT AACGCCCTGT TTCCCAGCTT CAAACATACA TGCAGAACAG 000240 000241 GATGACTATC AAATACCTTT ATCAAGTTGA TGAGGATACT GAAGTCTCGA ACAGCCATGT TCCAGTAGAG GAGTTTCTCT 000320 000321 TCATGAATCT GCTGCGAGTC TGCTGCTGTG CCAGGCTCAA TTTTTTTCAC CGTCTTCTCT AGTTCAGCCA TCATCACACG 000400 000401 GAAGAAAACA ACAAAAGTAT GCCTGGTCAG TGTAGGGAAT GTGGAGGAAG ATGCATCTTT AGGAGAGTTG ATCAGTTCTG 000480 000481 GGACACCAAC ACCAGCAATC TCCTCTATGG CCTTCAGAAT GCTCTCTGTG TGCTCCAGGT AGATACAGAG CAGAGCATGG 000560 000561 AGCTGGTCAT TAGAGATGTT GCTCTTCTCT TTATCCCCAC TTGGCCACAC CCGACAGAGG AATTGTCTGG CAAGGGAAGC 000640 000641 AATTTTTTCT TTGTTCTGAG CAGAAGCTGT TGATTTCTCC AAAATAACCA TCAAAAGTCT GATGAGATAA AGAGCACACT 000720 000721 GGAAACTGGG AATGCTTTGA TGGAAATTCT GCAAGTAATG GACGCTCTGG CTGAGTAGTT CCTCCAAAGG CTGGCTGTGT 000800 000801 TCTCCCTGTT TCAGTCGGCT ACTAAGGACA TGGAGGGCTG AATACAGTAA ATTCTGATTT TCAGGTTGAG AAAATCCACT 000880 000881 CCAAGCAAAA AGCCCATGAA AAATCTGCAG CAGCCTCTGA TAGCAGGAAG ACATTATGTG GTACTCCTGA ACTTTCACTC 000960 000961 CTGGTCCATC AACTACACCG TGATTCTCAG CAGCTAAACA CTAAAAATAA AAATGATTTT AGGAC |
Predicted Small Protein
Name | NONHSAT087881_smProtein_575:658 |
Length | 28 |
Molecular weight | 3121.6791 |
Aromaticity | 0.111111111111 |
Instability index | 40.8814814815 |
Isoelectric point | 10.2561645508 |
Runs | 5 |
Runs residual | 0.0214707461084 |
Runs probability | 0.0212329977036 |
Amino acid sequence | MLLFSLSPLGHTRQRNCLAREAIFSLF |
Secondary structure | LEEEELLLLLLHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |