NONHSAT088331
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088331 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
787 nt |
Genomic location |
chr3+:14178644..14189548 |
Exon number |
5 |
Exons |
14178644..14178731,14179348..14179468,14180680..14180797,14186822..14187183,14189451..14189548 |
Genome context |
|
Sequence |
000001 GGTGCTTGGG CCTCACCAAC TCCTGGTACC TGGCCAGGGC TAGGGTGTGG TCAGGCTGTT GCCCAGGAGC CCAGTTACCA 000080
000081 ACCTCAGGgt acttcacaga catgctccct gctcttggaa atgtagcGTT TAGTTAACTG CTTGAGgtga gaccttgggc 000160 000161 acatgactta ttctctcaga gcctcagttt catcatctgt aaagtggagG AGGTGTTTCA TAGAGAACTA AGGAGCAACT 000240 000241 CCATGAAGAC CTGGGGCCTG CGGGCAGCTG GCTGGATGGC CATGTTCATG GGCCTCAACC TTATGACACG GATCCTCTAC 000320 000321 ACCTTGGCTT TTTTTAGGCT TCTGTCACCA CAAAATGTTA CTTGGAAAAC TAGATCCCAG CAGATGACCT GTACTTCTCT 000400 000401 GCTCTCTCCC CTACTGCAAA GAGGCAGTGA GGGCAGCATT AGTAAGCCTG ACTCAGGGGA AGGTAAGTGG CCTGCAGAGA 000480 000481 AATGGTCCTA GGTCCGCAAC CGAGGCGAGT GAACTTGTCG GACAGATGAA GACTCTAACT GGAAGAAACG ATCAGCGCAT 000560 000561 TCACGGATGC ACCACCATCC AGAAATCTCC CGGTGGCTTC CATACAAAAA CTGATGTTTC TAAAGATGGA AAGAACAGGT 000640 000641 CTAGGAGGCA GAAGAGTATC TCCTAGCAAA GTGTTCTGTA GCTCAAAGGG CAGTCAGGAG CACGTCTTTG AATTCCTCGC 000720 000721 AGACGATGTA TCCATCAGTC CTGTGGGGAC ACAACGCGAT GTCAACCCTC GAACCTGCTG CCTGCTC |
Predicted Small Protein
Name | NONHSAT088331_smProtein_242:490 |
Length | 83 |
Molecular weight | 9313.8319 |
Aromaticity | 0.109756097561 |
Instability index | 46.0597560976 |
Isoelectric point | 10.2864379883 |
Runs | 10 |
Runs residual | 0.0139504804139 |
Runs probability | 0.0205529058471 |
Amino acid sequence | MKTWGLRAAGWMAMFMGLNLMTRILYTLAFFRLLSPQNVTWKTRSQQMTCTSLLSPLLQR GSEGSISKPDSGEGKWPAEKWS |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLEELLLLLEEEHHHHLHHHHL LLLLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooooooo oooooooooooooooooooooo |