NONHSAT088370
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088370 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1803 nt |
Genomic location |
chr3-:14984286..14989012 |
Exon number |
2 |
Exons |
14984286..14987661,14988617..14989012 |
Genome context |
|
Sequence |
000001 GGGCGGCGGC GGCTACGTAG CTGCCGCCGG CCTTGGCCGC GGCCGGGCGG GCGGATATGT GGCTTAAATG GCGCAGGCGT 000080
000081 CGGGGCCTAG AGGCTGAAGG GCTGGTCGTC CTAAAAACTC GTGGACGTCG CGCACGGTTA CCCGGACGCA GGCCCGCCCC 000160 000161 TCTGGGGAAC CGCGAGCTCC TCGCAGCTGG GTGGGGACCG TCCTCGCAGT GGCGGCCTCC ACCCTGCCTT CTCGCTTAGC 000240 000241 CAAGGCTTCT GGAAGGCTCG CAAAGTGTCT GTTGTTGGAA GAAGCCGGGC CCTGACTGGC GCGACGGATT CTCCCAGCCG 000320 000321 CTCAGCAGAG CGTCTGTAGA ATATGCTTTT TGTCTAATGA TGTTAGATAA AAAGCAAATT TGGAGCAGTT TTCTTATTCG 000400 000401 AGTTCAAAAT GGTTCATAAA GCAGCGAAGA CAACTCAAAA CATCAGTAAC ACATTTGGCC CAGGAACTGC TAACAAACAT 000480 000481 ACAGTGCAGT GGTGGCTTAA GAAGTTTTGC AAGGAAGAGA GCCTTGAAGA TGAGGAACGT GATATGGGCC ATGGGAAGTT 000560 000561 GACAACGACC AATTGAGAGC AATCATTGAA CTACATGAAA AATTACAGAA GAACTCAGCG TTGACTATTC TACGGTCATT 000640 000641 AGGGTCGTTC AGCATTCGAA GCAAATTGGA AAGGTGAAAA AGCTTGATAA GTGGGTGCCT CATGAGCTGA GCGGAAATCA 000720 000721 AAACTATCGT TTTGAAGTGT AGTCTTCTTT TATGCTACGC AACAACAAAC CATTTCTCAA TCGGATTGTG ACATGTAATG 000800 000801 AAAAGTGAAT TTTATACAAC AACCAGCTCA GTGGTTGGAC CAAGAGGCAG CTCCAAAGCA GTTCCCAAAG CCAAACTTGC 000880 000881 ACCAAAAAAA AGGTCATGGT CACTGTTCGG TGGTCTGCTG CCCATCTGAT CCACTACAGT TTTCTGAATC CTGGTGAAAC 000960 000961 CATTACATCT GAGAAGTATG CTCAGCAAAT TGGTAAGATG CACCGAAAAC TGCAATACCT GCTGCCTGCA TTGGTCAACA 001040 001041 GAAAGGGCCC AATTCTTCTC CACGACAACA CCTGACTGCG TGTCGCACAA CCAGTGCTTC AAAAGTTGAA GGAATTGGGC 001120 001121 TACAAAGTTT TGCCTCATCC ACCATATTCA CCTGACCTTT CGCCAACTGA CTACCACTTC TGCTAGCATC TTGACAACTT 001200 001201 TTTGCAGGGA AAACACTTCA GCATGGTGCA GAAAATGCTT TCCAAGAGTT CGTCAAATCC TGAAGCACGG ATTTTTATGC 001280 001281 TACAGGAATA AACAAACATT TCTCATTGGC AAAAATGTGT TGATTGTAAT GGTTCCTGTT TTGATTAATA GAATATGTTT 001360 001361 TAGCGTAGTT ACAATGATTT AAAATTCGCA GTCTGGAAAT TTAATTTTTG CATCAACCTA ATATTTCTAT GGTAAATCCT 001440 001441 TGCAAACATG GAAACAATGC ATTTGGCCCA GTGCTTTGTG GTTGTGTACT CTTTTTCTTT GTTTTTTTAA TAGATGGCAT 001520 001521 TGGCCGGGCA TGGTGGCTCA TGCCTGTAAT CCCAGCATTT TGGGAAGGTG AGGTGGGTGG ATCACCTGAG GTCAGGAGTT 001600 001601 CAAGACCAGC CTGACTAACA TGGTAAAACC CCATCTCTAC TAAAAATACA AAAAAATTAG CTAGGCGGGG TGGCGGGCAT 001680 001681 CTAATTCCAG CTACTTCATG AGGCTGCGAC AGGAGAATCA TTTGAACTCG GGAGGCAGAG GTTGCAGTGA GCCGAGATCA 001760 001761 CACCATTGCA CTCCAGCCTG GGCGATGAGC GAAACTGTCT CAA |
Predicted Small Protein
Name | NONHSAT088370_smProtein_56:238 |
Length | 61 |
Molecular weight | 6868.07 |
Aromaticity | 0.0666666666667 |
Instability index | 86.93 |
Isoelectric point | 12.1483764648 |
Runs | 9 |
Runs residual | 0.000265957446809 |
Runs probability | 0.0442893874266 |
Amino acid sequence | MWLKWRRRRGLEAEGLVVLKTRGRRARLPGRRPAPLGNRELLAAGWGPSSQWRPPPCLLA |
Secondary structure | LLLLEEELLLLEEEEEEEEELLLLEELLLLLLLLLLLLHHHHHLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |