NONHSAT088372
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088372 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1632 nt |
Genomic location |
chr3-:14984294..14985925 |
Exon number |
1 |
Exons |
14984294..14985925 |
Genome context |
|
Sequence |
000001 ATGTTGGTTT ATAGTTTTCT CATTTCTTTC ATTTAATACC TCTGTAAAAT GAAGCAGTTA CTTCCATTTT CCTGAGGTGA 000080
000081 GATAAGTGCC CTGCACAATG TTATAGGCCC AGTAAGTGAG ACTGGAGCTC TGATCTAATC CCTTTGACAT TAAAGTTTGT 000160 000161 GCAGTAAACC AGCTATGTCA GTTTGCCACA TTTGTAATAG TGTTCAATAA ATTTTCACTT AAAGGTTTAA TATTAAAGTA 000240 000241 GTAGCAAGAA TTCATAACCT TAATTGGCTT TAACAGCTTT TCTTTCCCTG AAAACAGATG CATATGTACA CATGCACACA 000320 000321 GATTGCTTAC AATATCAGCA CGTAAAAGGC CTTTGCACAT TGAAGTCGGC ACTGCTTTGG TGCCTTTTTT GTTTTTTGGC 000400 000401 TCGGTGTTTT GACTGCAAGT CTTTTTGGAT AGAATTTTAT AGTTAGAAAG TAGCTAACAC TTGGGTTTTA TAGGCACAAA 000480 000481 AAACAAGTCT TATACTAGCT GTACTTTATT TTTTGAGTTC TTATTAATGA GGAACATCCA CTTTTGCATT GACAGTGATT 000560 000561 TCAAGATTGC TTTATCAGCC TTTAAAGGAT TCTTGACTAG TCGTGCACAT CAGAACTGCC AGGTCCCCAG TGGTTCTGAA 000640 000641 GCAGTAAGCT TTGGGTGGGC TCTGGCATCA GCACTTTCAC TAAGCTTCAC AGATAATTCT GATGCATACT CCAGGCCTGA 000720 000721 ACCACTGATC AATTTGAAAC ATGCATAACA AAGCAAAAAA AGTTTTGTTT CACCTTTTGA AATACAGTTA ACTCTTTTAC 000800 000801 CATGCCAGAG ATCATTCAGA GAGACAGGTC GTTGCTCCGG AGTGATACAG ATCTGGCAGT ACCCAGCCCT TGTGTGTGTG 000880 000881 CGTTAGCTCA GCACCTGCCC ACACTGCGAG CCCCCGTAGG ATGTGCCTTG TCCTTCCCTG TTTCAGCACT TAACACACTA 000960 000961 CCTGGTACAG AGTATGTAGT GGGCATCTGT TGAATGAATG CTTTTCCCAG TAGCAGTGTA TTCATACAAT ATTAATATAA 001040 001041 TTGTCCCCTG GCTTACAGAT AAAAATGAAA GCATCAAGTG CCCAGTGAGT GAGACCCAGG TGTTCTTCCT CCACCCCTAG 001120 001121 TGGTCCCCTG GGCAGGTCTT TTTTTTTTTG TAACACTCAC CAGTCTGTTC TGTAGTCAAT CATTGATTGA CTTGTCTGTG 001200 001201 AACTTGGAGG AACTGTTTCA TAGTTTCATT AGCACAGAGT AAACATGTTT GCCATGCAAG GTTATTTTGC ATCTGCATTT 001280 001281 AAGTGATAAT GTTGAATCAA TGAAAAGTGT TGATTAAGCA GTAGTTGTAG ATATGCTAAG TTTTTCAAAT TACTAATATC 001360 001361 AAGTGGAGAT TGTTTTTACT TTTAAGGGTA TTGCTTTTGT GATAGCATAA ATAATGGTTT TCCTTTTTTG TAATGTAAAT 001440 001441 TAATTGCTGG CAACTTTTGT ATTCCCATAG ACTGGGGAAG CTTAATTGCC TTTACAAGTA CTTATGTACA ACTTTGTATC 001520 001521 AAATTTTCTG TAATAGTTTA TGCTTTAGTA CTATATATGT ACTAATAATT TTATCTGACT TCTGTTTATA TCATTTGTAC 001600 001601 AATTACATGG TTGTAAAATA AACTTTTAAA CC |
Predicted Small Protein
Name | NONHSAT088372_smProtein_311:445 |
Length | 45 |
Molecular weight | 5300.2709 |
Aromaticity | 0.204545454545 |
Instability index | 64.0047727273 |
Isoelectric point | 7.59942626953 |
Runs | 5 |
Runs residual | 0.0494652406417 |
Runs probability | 0.0463875640348 |
Amino acid sequence | MHTDCLQYQHVKGLCTLKSALLWCLFCFLARCFDCKSFWIEFYS |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooo |