NONHSAT088373
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088373 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3821 nt |
Genomic location |
chr3-:14984435..14989214 |
Exon number |
2 |
Exons |
14984435..14987661,14988621..14989214 |
Genome context |
|
Sequence |
000001 ggcgccgccg gggtcgcgga gaagggggGG TTTGTTATTG TTTTTGTCAG TGAAAGGTCA GAGTTCGTGA CCCCGGTgcc 000080
000081 gccgccgccg ccgcccgcgc gcTGGTAGGA GGAGGGCGAA TGTTCTTCTT CCTCTTCCCA GCGCCAGCCT cgccgccgcg 000160 000161 gcggggggcg ggcgAGAACG CGATTGGCTG AGGCGCGCGC GCGCACCGGA ACGCCGCAGC CGGCGCTCGG TCCATCCGGC 000240 000241 CCGTGGGCTG Tggggccccg ggcggcggcg gcTACGTAGC TGCCGCCGGC CTTGGCCGCG GCCGGGCGGG CGGATATGTG 000320 000321 GCTTAAATGG CGCAGGCGTC GGGGCCTAGA GGCTGAAGGG CTGGTCGTCC TAAAAACTCG TGGACGTCGC GCACGGTTAC 000400 000401 CCGGACGCAG GCCCGCCCCT CTGGGGAACC GCGAGCTCCT CGCAGCTGGG TGGGGACCGT CCTCGCAGTG GCGGCCTCCA 000480 000481 CCCTGCCTTC TCGCTTAGCC AAGGCTTCTG GAAGGCTCGC AAAGTGTCTG TTGTTGGAAG AAGCCGGGCC CTGACTGGCG 000560 000561 CGACGGATTC TCCCAGCCGC TCAGCAGAGC GTCTaatatg ctttttgtct aatgatgtta gataaaaagc aaatttggag 000640 000641 cagttttctt attcgagttc aaaatggttc ataaagcagc gaagacaact caaaacatca gtaacacatt tggcccagga 000720 000721 actgctaaca aacatacagt gcagtggtgg cttaagaagt tttgcaagga agagagcctt gaagatgagg aacgtgatat 000800 000801 gggccatggg aagttgacaa cgaccaattg agagcaatca ttgaactaca tgaaaaatta cagaagaact cagcgttgac 000880 000881 tattctacgg tcattagggt cgttcagcat tcgaagcaaa ttggaaaggt gaaaaagctt gataagtggg tgcctcatga 000960 000961 gctgagcgga aatcaaaact atcgttttga agtgtagtct tcttttatgc tacgcaacaa caaaccattt ctcaatcgga 001040 001041 ttgtgacatg taatgaaaag tgaattttat acaacaacca gctcagtggt tggaccaaga ggcagctcca aagcagttcc 001120 001121 caaagccaaa cttgcaccaa aaaaaaggtc atggtcactg ttcggtggtc tgctgcccat ctgatccact acagttttct 001200 001201 gaatcctggt gaaaccatta catctgagaa gtatgctcag caaattggta agatgcaccg aaaactgcaa tacctgctgc 001280 001281 ctgcattggt caacagaaag ggcccaattc ttctccacga caacacctga ctgcgtgtcg cacaaccagt gcttcaaaag 001360 001361 ttgaaggaat tgggctacaa agttttgcct catccaccat attcacctga cctttcgcca actgactacc acttctgcta 001440 001441 gcatcttgac aactttttgc agggaaaaca cttcagcatg gtgcagaaaa tgctttccaa gagttcgtca aatcctgaag 001520 001521 cacggatttt tatgctacag gaataaacaa acatttctca ttggcaaaaa tgtgttgatt gtaatggttc ctgttttgat 001600 001601 taatagaata tgttttagcg tagttacaat gatttaaaat tcgcagtctg gaaatttaat ttttgcatca acctaaTATT 001680 001681 TCTATGGTAA ATCCTTGCAA ACATGGAAAC AATGCATTTG GCCCAGTGCT TTGTGGTTGT GTACTCTttt tctttgtttt 001760 001761 tttaatagat ggcattggcc gggcatggtg gctcatgcct gtaatcccag cattttggga aggtgaggtg ggtggatcac 001840 001841 ctgaggtcag gagttcaaga ccagcctgac taacatggta aaaccccatc tctactaaaa atacaaaaaa attagctagg 001920 001921 cggggtggcg ggcatctaat tccagctact tcatgaggct gcgacaggag aatcatttga actcgggagg cagaggttgc 002000 002001 agtgagccga gatcacacca ttgcactcca gcctgggcga tgagcgaaac tgtctcaaaa aaaaaaaaag ttggggtctc 002080 002081 gctgtgttga ccaggctggt ctcgaactcc tggcctcaag tgatcctccc atcttggcct cccaaagtgt taggattaca 002160 002161 ggcgtgagcc accacaccct gccTGGTTGT GTACTCTTTT AAATACTAAG TTTTTAATGT TAAATGCTGC TTTTAGATAC 002240 002241 ACTGTAAAAA TACACCTATC AATGAGTTTT TTTATTAAAA ACATTGCAAT TGTACTAGAC TTTAAATACT AAGCAATAAT 002320 002321 TCAGGCTTCA ATGTTGGttt atagttttct catttctttc atttaatacc tctgtaaaat gaagcagtta cttccatttt 002400 002401 cctgaggtga gataagtgcc ctgcacaatg ttataggccc agtaagtgag actggagctc tgatctaatc cctttgacat 002480 002481 taaagtttgt gcagtaaacc agctatgtca GTTTGCCACA TTTGTAATAG TGTTCAATAA ATTTTCACTT AAAGGTTTAA 002560 002561 TATTAAAGTA GTAGCAAGAA TTCATAACCT TAATTGGCTT TAACAGCTTT TCTTTCCCTG AAAACAGATG CATATGTACA 002640 002641 CATGCACACA GATTGCTTAC AATATCAGCA CGTAAAAGGC CTTTGCACAT TGAAGTCGGC ACTGCTTTGG TGCCTTTTTT 002720 002721 GTTTTTTGGC TCGGTGTTTT GACTGCAAGT CTTTTTGGAT AGAATTTTAT AGTTAGAAAG TAGCTAACAC TTGGGTTTTA 002800 002801 TAGGCACAAA AAACAAGTCT TATACTAGCT GTACTTTATT TTTTGAGTTC TTATTAATGA GGAACATCCA CTTTTGCATT 002880 002881 GACAGTGATT TCAAGATTGC TTTATCAGCC TTTAAAGGAT TCTTGACTAG TCGTGCACAT CAGAACTGCC AGGTccccag 002960 002961 tggttctgaa gcagtaagct ttgggtgggc tctggcatca gcactttcac taagcttcac agataattct gatgcatact 003040 003041 ccaggcctga accactgATC AATTTGAAAC ATGCATAACA AAGCAAAAAA AGTTTTGTTT CACCTTTTGA AATACAGTTA 003120 003121 ACTCTTTTAC CATGCCAGAG ATCATTCAGA GAGACAGGTC GTTGCTCCGG AGTGATACAG ATCTGGCAGT ACCCAGCCCT 003200 003201 TGTGTGTGTG CGTTAGCTCA GCACCTGCCC ACACTGCGAG CCCCCGTAgg atgtgccttg tccttccctg tttcagcact 003280 003281 taacacacta cctggtacag agtatgtagt gggcatctgt tgaatgaatg CTTTTCCCAG TAGCAGTGTA TTCATACAAT 003360 003361 ATTAATATAA TTGTCCCCTG GCTTACAGAT AAAAATGAAA GCATCAAGTG CCCAGTGAGT GAGACCCAGG TGTTCTTCCT 003440 003441 CCACCCCTAG TGGTCCCCTG GGCAGGTCTT TTTTTTTTTG TAACACTCAC CAGTCTGTTC TGTAGTCAAT CATTGATTGA 003520 003521 CTTGTCTGTG AACTTGGAGG AACTGTTTCA TAGTTTCATT AGCACAGAGT AAACATGTTT GCCATGCAAG GTTATTTTGC 003600 003601 ATCTGCATTT AAGTGATAAT GTTGAATCAA TGAAAAGTGT TGATTAAGCA GTAGTTGTAG ATATGCTAAG TTTTTCAAAT 003680 003681 TACTAATATC AAGTGGAGAT TGTTTTTACT TTTAAGGGTA TTGCTTTTGT GATAGCATAA ATAATGGTTT TCCTTTTTTG 003760 003761 TAATGTAAAT TAATTGCTGG CAACTTTTGT ATTCCCATAG ACTGGGGAAG CTTAATTGCC T |
Predicted Small Protein
Name | NONHSAT088373_smProtein_3131:3322 |
Length | 64 |
Molecular weight | 6677.7702 |
Aromaticity | 0.031746031746 |
Instability index | 64.4698412698 |
Isoelectric point | 5.49713134766 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0457436045671 |
Amino acid sequence | MPEIIQRDRSLLRSDTDLAVPSPCVCALAQHLPTLRAPVGCALSFPVSALNTLPGTEYVV GIC |
Secondary structure | LLLEELLLHHHHLLLLLLLLLLHHHHHHHLLLLLLLLLLLEEELLLLLLLLLLLLLEEEE EEL |
PRMN | - |
PiMo | - |