NONHSAT088508
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088508 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1178 nt |
Genomic location |
chr3-:16301417..16306284 |
Exon number |
3 |
Exons |
16301417..16302336,16305662..16305736,16306102..16306284 |
Genome context |
|
Sequence |
000001 ATCACCAAGG TAACTTCAGG GTCCCGCCCG GCGGTTCACC CAAGCAAGCG CAGTTTGGTT CCGCCCGTTC CTTCCATCAT 000080
000081 TGGGTAGCCT TTGCTGCGCT GTGTCACCCA CGCCCTCTTT CCCGTTGCTG AATCTTCCTC CTCCCGCGTC CCCCCACCCC 000160 000161 AACTAATGCC CTGAGCTCTC TCGGAAGATT TGGAGAATGG GGAAGACGTG GCAACGTGTC CTAGCTGCTC TCTCATTATA 000240 000241 AAAGTGATTT ATGACAAAGA TCAGTTTGTG TGTGGAGAAA CAGTCCCAGC CCCTTCAGCC AACAAAGAAT TAGTTAAATG 000320 000321 CTGAAGAAGC CTTCAGGAAT CCAAATCCTG AACATTTGGA ATGAGCCCAG ATAGAAATAT CGAATGCAAA GCTACTGGCT 000400 000401 TCACAGAGAC AACCATTTAT GATTTGCTGT TCTGTAAGAG TGTGGATTCT TTCTATCAAC TGCTGATATC ATCTTCAGGA 000480 000481 AGCAAGTCCA TAACATGACA TATCTGGATT TTGTGCTTAG AACCTTAAAT TGGAAGCATT CTTAATTATG CATCTAAATT 000560 000561 TAAAAGAAGA TAATTTCAAA ACAGTGCTTT CTTTCCCTTG GTTTCATCAT TTTCATATCT TAAACCAAAT TACTTCGGTA 000640 000641 TCTGACAACA GCATCATCTA CCTCAGTCAT TAGGATTTCT TAATAAAAAA GAGATTGTAT TTTTGACTTG GTTATTAAGA 000720 000721 TTATTAAAAT TAGCCCTTCC TTTGAAATAT GACATCAGCT TTGCTGTTCT AAATTTAAAA TTAGTTGCTT CATCAGTACC 000800 000801 ACACTTCCAG TTTCTATACC AAGCCAGTCT CCTCAGTTTT CCCATTAGAA TGGACATGTT CTGTTCAGCG TGTCATTTCT 000880 000881 GTAATGCTTC ATGCAGAGAG TTTGGTCATA GTATTAAAGA GAAAATACAG TGAGGTCACA ATGTCTCCAG AGCTAAAAGT 000960 000961 TAGTGAACAA GAAAGAAAGT CCAAAATGAA GTGATGAAAG AATGAGGACT TTTCTTATAT TCTGCATATT CCTTGGAAGT 001040 001041 CAGGACAAGA TGAAAAGAAA AACATCCAAA AGAAGTGAAA TTGGTGACAG AATGAGAGGA GCAAAGCATA CCAGTGTAGT 001120 001121 AAGTGGAATG TTTGAATGAC TTTGCCAGGT CAGAGCAAGT AATATTTCTG TATCTGAG |
Predicted Small Protein
Name | NONHSAT088508_smProtein_1001:1138 |
Length | 46 |
Molecular weight | 5212.13 |
Aromaticity | 0.0888888888889 |
Instability index | 48.7755555556 |
Isoelectric point | 10.5317993164 |
Runs | 9 |
Runs residual | 0.0377525252525 |
Runs probability | 0.0160454572219 |
Amino acid sequence | MRTFLIFCIFLGSQDKMKRKTSKRSEIGDRMRGAKHTSVVSGMFE |
Secondary structure | LEEEEEEEEEELLLHHHHHHLLLLLLLLLLLLLLLLLEEEELEEL |
PRMN | - |
PiMo | - |