NONHSAT088567
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088567 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1582 nt |
Genomic location |
chr3+:18503767..18505831 |
Exon number |
2 |
Exons |
18503767..18505295,18505779..18505831 |
Genome context |
|
Sequence |
000001 aaatatctat gctatctttt aaaaattata tgagtagata gaaaatttca acagactact attaactgtg ataaagaatc 000080
000081 aaatggaaat tccagaactg aaaaattaac tgaaattaaa aactcaatag ttggatataa gagcagatta gaaattcttg 000160 000161 aagaacaaac ttatgagcaa tagaaattTT GAtgttaata cctaacaaag tcagaaaagg tgtattggaa aatggtttct 000240 000241 ctcatgtaac tggtgacatg taaacctata taccactttt tggaaatact ttgataatgt gaattcacta tttgaacaaa 000320 000321 aaaatttata tcttttaacc cagtaatctt atctctggga atgtgccata ggaaataagt ttttaaatcc acagtgcctc 000400 000401 atgtatgaag atattcacta cagacttatg atagTAATAa ctatctacag acaatgttta aatactttat ttcaattaat 000480 000481 gcaggttaat cctcacaaca atctatggtg ctagtgaaca ttactatcct cattgtacag atgagaaaac tgaaacattg 000560 000561 agaagtcaag taacttgctc aagattatat agctagtgca tagaggggca aagatttgaa ccagattgcc tggttccaca 000640 000641 tgcactttaa cctgctttat tTAGGCTTTT GAAAGCAACC TAAATAGCTA ACATTGACTA AATAAGTGCA GTATACCTGG 000720 000721 TCTGTGTGAC ATTTTGCAGG TATTAAAAAG TGAACATTCT GAACCCTTTT AGCAATATGG CAAATACTTC TGATGTGatg 000800 000801 tatgcatata aatatgatcg aaagcaaata tcccaaaagg ttgatggcag ttatgtcagg ttagtagcac aatagtttct 000880 000881 tttctcattt tctcacattt ttagtaATGT GTGTTGCCTA TATTAAAAAA CAAATATTAA AAagtagtag catgtattag 000960 000961 atcagagcat gggctcagac tgcctgtgtc atctcttatt agatgtatga ccagggacaa gttattgacc ttttgtttct 001040 001041 aagtctctaa gtttatcctg taaaatgaag ataattgtag taactaccta ataacatgat tgtaaggatt aaattattta 001120 001121 gaacaCTATT TGTTACTTGG AAAATATGCA ATCATAAGCT ATTTTGTTGT TATTGTTATT TTACTACCAA AGCTTATTGT 001200 001201 TTCAGAGCCC CTAGGTGACC AGGCAAAATG GCAGTTCCTT CCAGCTGGTC CTCAGATGGG CACATCTATT AGTAAGTTTC 001280 001281 ATTTCTGTAT TTGGATCTTT ATTCATCCTT ATTATGAATT CCCCAATACT GAGGTTTCTA GGAACCTACC TGCCATTGGC 001360 001361 TGAAGGGTTG CTTCTGAATT CTTTCCCAGA GGCAGTGACA AAAATCAAAC ATCCGATGTG TTCTTTACCT TTCAGTAAGC 001440 001441 TCAGCCTCCC TGCTTGTGTC ACATCTCTAA ACATACGTAC ATGCGTGATT GAAACTGTCT ATTGAAAGCA ATATTACATT 001520 001521 AACATTATCG CCTCTGCTCT TGTAAGAAGT TAGCTGCAGA ACCCACATGT GAATCCTTGT AG |
Predicted Small Protein
Name | NONHSAT088567_smProtein_1313:1504 |
Length | 64 |
Molecular weight | 6953.28 |
Aromaticity | 0.0793650793651 |
Instability index | 51.6253968254 |
Isoelectric point | 8.58966064453 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0259832024538 |
Amino acid sequence | MNSPILRFLGTYLPLAEGLLLNSFPEAVTKIKHPMCSLPFSKLSLPACVTSLNIRTCVIE TVY |
Secondary structure | LLLHHHHHHLLLLHHHHHHHHLLLHHHHHHLLLLLLLLLLLLLLLLLEEELLLLEEEEEE EEL |
PRMN | - |
PiMo | - |