NONHSAT088842
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088842 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1829 nt |
Genomic location |
chr3-:31572453..31574281 |
Exon number |
1 |
Exons |
31572453..31574281 |
Genome context |
|
Sequence |
000001 AATCGCCGCT CTCTCAACCC AGATGGCCCC GGCGCCCCAC TAGCCATCCG TATCCCCAGT GCAGCTGCGG CGGCGGCGGC 000080
000081 GAAAGCCGAC GGGACGAGGG CGCCAGGAAA GAAGCAGCAG ACGGAGGCGG CACCACGGCT CTGAGAAGCA ATGACATTCC 000160 000161 CTCTCTAGCC CGCCGCCCGC CCAGCCGAAA GGAGCAGGGG GAGGAGCCCC CTGGAGTCCG GGCGGAGCTC AAGCAACCTC 000240 000241 TGACTCCGCC TCCGGCCCGA CAGGAACTGG CCCCTCCGCC TGTCACAAAG CGACAGGTCC GTTAGGGGGC GGGCCCAGAA 000320 000321 CCGCTGCGCC CACCAATAGG GGCGCGAGCT GGGGCGGAGC TTGACCCAAC CGTCTCCCCC TCCCCCCCAC CATCCCGGCC 000400 000401 TCGCGCCGAT TCGCCCGGAG TGGCCGAGCT GCGCGGCTAC GGCTTCATTG TCAGTTGAAA GACGCGGTTT CGCGCGCCTG 000480 000481 TGCGGTCGGC GAGAAAGGGT ACTAGGCGGC TCCGCTAGGT TCATGGAGCT GAGCTGGGCC GAGGGGCGGG AACTGCGGAG 000560 000561 CGGCCTCGGT CAAACTCGTC TTAAAGGACG CGGAAAGCGC CGCACCGACC AGCAGGACGC TCGCGGGCTC TCCGCGGTCG 000640 000641 TGACTTTTAA CCCGCTTTGC GCGGAGCCCT CACCACGTGA CGGCCGCGCA GGCGCATTAT CCTAGCCCTC GGCGCGTGGG 000720 000721 TCGGGCCGAG GGGTTCAGCA GCCCGTGGCG CTCCTCGGCT GGCGCTGCGA GTGAGCCCGC GGCGGCAGTG ACACAGCCTA 000800 000801 CCTTGCTCAT TGCCCTTCAC GTCCCGCCTC CGGCTTCTGC GGCCGCGGGA ATCCGAGAAT GTGAGCAAAG ACAAGTTTTC 000880 000881 CGACACCGAA AACTCGTTGG AACCGGCAAG CGCGCCCCTA GCTCCGGCAG GCAAAATGCG ACCTTCTCTC GCCCTTTTTC 000960 000961 GTTTGTACTC CGAATTGCGA AAGTACTGTA TGTTCACTGG AAATATGGGA AAATGCAGAA ATACATTAAC GGCTGCATAC 001040 001041 ATTCCGTCGA GTGAGTGAAA CTAACTTACC Ctggacgtta agctgtttcc agttctcact ttactaaata ataatagaac 001120 001121 gaaggttctt gtgcacgtct accttgtATT TTTATAATTC CTTTCCTTTC CCCACTTCCC TCCTTGTCCG CTAAAATAAA 001200 001201 GTGCTACCAG ATAAACTCAG GGCAAAATGA GCTTAAACTA AGTGAGGTAG TGGGGAGACT CGAATTGCTC TTATATAAAC 001280 001281 CCCATAGAAA GTACGGAGCT TTCGGCGTAA TCGGTGCTCA GTAAATACTT GTTCATGTCA ATTCACAGCT AATTGTACAT 001360 001361 TTTATTAGGT AAGTAACATC TGGATATTAA AGGGCATATT AATGTAAAAC TATAAAGGCC CTGAATTATT TTCTTAGGTG 001440 001441 ATTTAAATTT TTCTCTTTAA CTACAAATTG TGTTTCAATA TTAATAGAAG TCTTAAAATA TTAGATAAAT GAACCCTAGT 001520 001521 TATTTTGAGG TAGCTCCTTG AAAGTAAGGC AACTCCAGCT ACCCTTTTAA CCTGCTAAGT GGTTACGTTT TGTCTTGTTT 001600 001601 CCTTAAAAAA ACCATAAATA GTCTTATTAA GGAAATAATG AAAAGGTTTC CAGAAATAGA CTTTCTCACC AACAGTTTAA 001680 001681 TAGCCGACAT TTATTGAACG TACACATTTT AATGAGAATT AGGATAAAAT ATTAACTGCC TCTGTTATAC AGAGAAAGAT 001760 001761 GACATGCTTT TCCTCATAGC CCAAACGGTA CATGCTGAAA TGACAGCAGA GGATTTTTGT CTGTGTTCC |
Predicted Small Protein
Name | NONHSAT088842_smProtein_935:1057 |
Length | 41 |
Molecular weight | 4621.4101 |
Aromaticity | 0.125 |
Instability index | 43.595 |
Isoelectric point | 9.58856201172 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.0256769374417 |
Amino acid sequence | MRPSLALFRLYSELRKYCMFTGNMGKCRNTLTAAYIPSSE |
Secondary structure | LLLHHHHHHHHHHHHHHHHHLLLLLHHHLLLLEEEELLLL |
PRMN | - |
PiMo | - |