NONHSAT088931

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT088931

Source

NONCODE4.0

Same with

,

Classification

sense

Length

6273 nt

Genomic location

chr3-:33537737..33546943

Exon number

2

Exons

33537737..33540209,33543144..33546943

Genome context

Sequence
000001 gggtttcaac ttcattcttt ttcatgtACT GAAAATACTT TTTTATTTTC AGTAAGAAAC TTACCTAACT GCCTACCATC 000080
000081 CCCCATGCTC AGTAGCCTTG ATgatggtgg cccatatttg tggtgtagct tgctggtgcc aggagggaca tggaccttgt 000160
000161 tctcaaaaaa ttgtggttat gttttgttgt tgttgttgtt gttgttgttg ttgttgttgt tgtttttatc tctggcattc 000240
000241 cctgagaggc tggcacagag actagccttt gtttcacctc ccatcaggct gaagtggctt cctaagtgga gtctattgaa 000320
000321 aagatttaaa aacatactac ccatagccac ctgaggcaag ggagagcaga caagacaagc agcaaacaaa agcctgggaa 000400
000401 ggaggaagct gatgaagaag ataatttgtg aaataagggt tttgctgggc ccacgtgtac tgaggaatcc accaaaagta 000480
000481 tgctcagaaa agactttaga gcaggggtcc ctaaccccca ggccatggac tggtactgat ccatggcctg ttaggaactg 000560
000561 ggccacacag caggaggtga gcagtgggca agcgagcatt accacctgag cttcgcctcc tgtcagatca gcagtggcat 000640
000641 tagattctta cagaagtatg aagcctattg tgagttgcac atatgaggga tctaggttcc atgcttctta tgagaatcta 000720
000721 atgcctgatg atctgaggtg gaacagtttc atcctgaaac catcccccca tcacccttcc ccatccgtgg aaaaattgcc 000800
000801 ttccacaaaa ccagtccctg gtgccaaaaa ggctggggac caccgtctta gagggcccta ggcttggacc tctggatgtt 000880
000881 ctttgggctc catgcaagta ggagttgggc taagacagaa ttgtaggcag cctagctaat tgaatgatta cgcagctcag 000960
000961 agtcaatctg caaagactgg gagagtttgt cttgttttgt tttgacccca ggcatttaag gaaatctctg tcaggtcact 001040
001041 ggctaactgc tgaggtaaca aagagacttc agtgaccaca taccgtaaac aaaatttact caaacaaatc agtgatctaa 001120
001121 atatagctac taaaactaca aaactcatag aagaaaacat agcgataaat ctttatgacc ttagatttaa gttcatcctc 001200
001201 tatggcagtg gattattaga tatgacacct aaagcatcaa tgataaataa aaaataggtt aattgaactt catcaaaatt 001280
001281 aataactttt gttcatctca ggacctaatc aaaaaactga aaagacaacc tatagtatgg gagaacattc ttgcaaatta 001360
001361 tatatctgat aatggtctac tatccagagt atatataaag aactcttata actcaacagc aaaaggataa ataactttta 001440
001441 aatggacaaa ggacttgaat agctatttct tcaaagaaga tgtacaaatg gccagcaagt acgtgaaaag atgcttggtg 001520
001521 tcattagtaa ttacggaaat caaaaccaca atgagatacc acttcatacc cactgggatg gttgtgatca aaagaacaaa 001600
001601 aataacaggt tttgatgagg atgtacaaaa attggaaccc ttatacattg cttgcataaa tacaaattgg tggtacagct 001680
001681 gctgtggaat gcagtttggc agttcctcaa aaagttaaca taaaggccgg gcacggtggc tcacacctgt aatcccagca 001760
001761 ctttgggagt ccgaggcggg tgaatcactt gaggtcagga attgaagagc agcctggcca acgtgatgca accccatctc 001840
001841 taccaaaaat acaaaaatta gccaggcatg gtggcgggcg cctgtaatcg cagctatgtg ggagaccgag gcaggagaat 001920
001921 tgcttgaacc ctggaggtgg aggttgcagt gagctgagat cacatactgc agtccagcct aggcaacgga gcaagacgtc 002000
002001 atctcaagga aaaaaaaaaa aaggaaaaag ataaagttaa cacaaaattg tcatataacc cacctattct attcccaggt 002080
002081 atatacccaa aagaagtcaa agcaaatatt taaatagtta tacatgaatg ttcatagcag cactattcac agtagccaaa 002160
002161 aggtgaaaac aacccaaata tccattaata aatggataaa caacatgata tatcatacaa tggaatatta tccaatcata 002240
002241 aaTATTACAT TCCTATTCCA CTCCTTGCCC ATAATACCTC ATTCTGCCAT GCGATTCCCT AACTGTTCTG GGAAGGGACA 002320
002321 GTGCGTGTCT TTTTGGACAC TGAACATTAT TTACCTGGCC TGTTCTTGTC ACATACCAGG CACTTAAATA TTTAAACATT 002400
002401 GAATGCCATA CTCTTTGCAG TGTTATTTGT AATAGGAAAA ATTTAGCAGG AAGGAGGTTA TTGGGGAGGA AGATGTAAAC 002480
002481 TTACAATACT CTAGAATGGT TAAATTAGGA AGCATACTAA ATGAATGCCT CATATCATTA TTATAAAGAC CATATAGAAA 002560
002561 AATTAATTTA CATTATAATT GCAATTATAT TAAAATGATG GAAAATAAAA TTAACAGTTT GATTGCATGA CTTAGGAATA 002640
002641 ATGTACTTCT TTTAGCTAGA TATCTATTGA TATTTTAATG TTTCTGCAGT TGTTTTAGAA AGATAAAATG ATTAGGATTT 002720
002721 TAGTGGAGAT GAGCTCTATT TTTTCCCTGG AGTAAAATGT GCATATTCAT TCAGATAATT CATTCAAAAA TATTTCATGG 002800
002801 ATAAGATTGC TGTAGAGTAT TGAAATAGAG TAAGTAGTGT GATCAAAAGC GTAAGTGGga gagatggaca gagaaaggga 002880
002881 agatgttggt caaaaggtac aaagtttcag ttaaagagta ttaggttcta gctacgtatt acacagcaca gtaactagtt 002960
002961 aataatgtat atttcaaagt agcaattata aaagaaaatg cattttaaat gttaccacaa agaaatgata agtatctgag 003040
003041 gtgatggata tgttgattag cctgatttgg tcattccaca gtgtacatgt attgaaacat cacattatac cccataaata 003120
003121 tatacaatta ttatttgtca attagaaaca aGttaatttt ttaaataaaa ttaGGTTATT AAAGGCACAG TAAAAGCATA 003200
003201 GGGGAATAGT TTACATAGAC TAGATTTATT AGAGAAAGTA ATTGCAGGGA TGGAACAGAT GTAAAACTTA ATCGGGCCTG 003280
003281 GATTATGTGA CTACCTTGAG CTACCAAACC AATGAATTTA GGTTTTATCG GATAGTGAGG AGTGCTGACT GCCTTAAAAC 003360
003361 CTAATGCTTT AGGAAAGTTA GTCTGGAGAC TTTTTTCAGG GTGAATTGGC AAGTGAGCAG CCTCAGAGTC AGAGAAGTGC 003440
003441 AGCTTTCCAG ACTAAGTAAG AACCTGATAT AGAGGGCTAA CAGTGAGGGC GCAGTAGGGG AAGTGAAGGG AGAGAAGGGC 003520
003521 ATTGTCTATG CTTGAAAAGG TTAAAAAGTT AACTTTGATC TGCACTTTTC TCTCCTTAGT ATGCTCGAGA TTTCATCTTT 003600
003601 CAGCTGCATC TTCTGACCCT GTTAAAAAGG GAGTACTAAC AGTGGACTTC TCTGGAGTAC TAACAGTGGA CTTCTCTCCG 003680
003681 TAGGGTTATG ATAATTCAGA GAGCAGTGTT CGGAAAGCTT GTGTCTTCTG CCTGGTGGCT GTTCATGCGG TAATTGGTGA 003760
003761 TGAACTAAAA CCACATCTCA GTCAACTTAC TGGCAGTAAA ATGAAGCTAC TGAATCTTTA CATCAAACGT GCACAAACAG 003840
003841 GTTCTGGAGG AGCTGATCCC ACTACTGATG TTTCTGGACA AAGTTAGTGA AGCTCATCAC AGCGAACCAG GTCTCTCAAA 003920
003921 AGAAAGGACA GATAGACCAC CCTCATCAAT GAAAGGAAGT TCTCAAACAC ATCCTTTGGA ACTTACTATT GTTTCCCAGT 004000
004001 TTTAGTTTTT TGTTTCGTTT CGTTTTGTAT TTTCTGTAAC AGAGGACTAT CCTCAGTCTG CATGTAACTT TTATGATAGT 004080
004081 TATTCCAAAT TCAAGAAGAA GCAGTATTAA CATCAATTGA TCGACACAAA GTAATTTTTA ATTTAATTCA TCATTTCACA 004160
004161 TGTTTGTACT TTGTCTTCCC ATTAACCTTT GCCAGTGTTA TGATTGTATA AATTTTTTTA AATGCTGGTT AAACAGGAAT 004240
004241 GCTTAAAGCT TTAAAAGTTT AACAGTCTAA AACATTTTTG CTTTTATTCA ACTGCAGAAT AATATTTTTA TTGCTACTTT 004320
004321 GAGTTTTGTT TCGTATCATG TCCTATGCTA GAAATATTTA AATGATGTGA AACAAAGCAG GACTAATTTG AACTACAGCT 004400
004401 GGACTCCGTT TGTGTGATGG TGATACATGT CATTAGTTGC AACTTCTTTG GGGTGATCTA TAGTTTGAAA ACTAAAACCT 004480
004481 CAAAGACAGA TGTTACAGAA TCAGCCAGTT CTGTAAAACT GATATTGTCT ATTGGTTATT GATCTTGCCA TCTTTATTTA 004560
004561 AAACCATGTC CCTTCTATGA TCCCTTAAGA AAGCTGCACC AAATCATCTG CCTGTTTTTT CTTGATACTT ACTGAAATAG 004640
004641 AAGGTTTTAT TGCAGGGTTT ATTTTGGTTT GTTTATATCT TTGTTGTGAA TGATGCTTTT TTGTATTTAT TAATATCAAA 004720
004721 TTCACTTATG AATAAACTTG ATAATGGAAA CGGACAAAAA AAATCAAGTG CGTGTGTGTC CTTGACCGTC TTCTGTTTCT 004800
004801 CACGTAATAA ACAAATTATC GAGACATGGG AGTGACCAGC ACCTTTTCTT TAAATGGTGG AACCTGGTTT CCTTTTACCA 004880
004881 TGAAATTGTC TTACTTGAAA ATATTGATCC TGATGAGAGA GAAGATGGTG CCAAGGCTGT CTTTGTATAA TGGGCTCAAA 004960
004961 TTCTCTACCT CTTCAGGGCT AATACTTTTA ACTGAGCTGC TGCCTATAGT GTCTTTTGGA AAACTACTTA AAGGGTGATT 005040
005041 TTCTGTTACT TTTTAGCAAA TTTTTTTAAT CACCTCTTGC TACACCCATT CTTTTCATGT GCAGCCGACT CAAAAATTAC 005120
005121 CAGTTTTGGT GAAAGGCTAA ATTAGATAAT TTGGAACCAG GATACTAATG ATTTCTCATC TTTACTTTTT TTTAATCCTA 005200
005201 ATATAAAGTG AATTTGATTG AAAAGGCAAA TAGCTATTAG GGAAGCAGTT TGCCATTGTT GCAGAGTTAT CTGTACTTTG 005280
005281 TTTAACTGAA AAAAATGTAG AAATATATGT AAAGAATTTA AGACAAGAGT ACTGAATGGA TGATTTGTCA TAGGCTTTCC 005360
005361 CCTTTCTTTC TGTTCTAGCA GCAGGAAAAG TTTCTCTATA TCCTCTCCCT CTACCTGTAA CAATTTTGTT TTCTACTGTT 005440
005441 AATTACATTG TGTATTTATA GTTCTATGCT TACTGTTGTG CATATACTGG CAATAAAACT GTACATAACA TTACTTGAAA 005520
005521 AAGTTAATAA TGTATATCAG TTTTTCTGTC TCACTGTGTA ACAAGTCACT CAGTTTTATT TTAACTTTAG ACGGTCTTGT 005600
005601 ATCAGTGGTG GTCTCTTGAA TTTTGTAAGT TCATCTGAGG AGAAAAGATT TTTCAGGTGT AGCTACCACA ATCAAAGGTA 005680
005681 TATAGCTACA TACGCATGTA TATATTACAG CTTATCTGTA AGAAGAAAAT GCATTTTAAA CACAACTCTT CTCAGTAGCA 005760
005761 TTTTATGACC TTTGGATATG TTTGTAATCA TTTCGAATCA AAATATTGAT TTAATTTTGA CCTCTGGTTT AAGATACTGC 005840
005841 TTTAACTACT GTTGACAACC AAGTAGAGTG ACTTAAGCTG AACAGTAACT AACTGGAAAA TTAGATAAGC ACCTGGCATC 005920
005921 TAATGGCAGG CAGGCACTCA AGAAATGAAT TAACTACATA ATGGAAAAGT ATGGTTTAAT GTGTCCAAAT GAAAGCTAGT 006000
006001 AGATGTAAAC ATGGAAAAAT TGTGTTTACA ATTTTATAAT CTCAGTTGAT AAGACTATAA GAAAGCTGAT TATTTAAATC 006080
006081 ACTATATACA ATACACCCTT AATTTGTTCA TTCCAGAAAC ATACTGAGAT GTCAGCTACT TAAAAATGGT CACAAAAAGC 006160
006161 TACTGTTTAT ATTTTTCCTC CTGCTATTCT CTCCCAAATT AATTATTAAT AAGTGTTGTT CATTTACTGC ACTGCTGAGA 006240
006241 ACTAATTAAA ATTATATATT CCAGATTGTA AAA
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Predicted Small Protein

Name NONHSAT088931_smProtein_2123:2386
Length 88
Molecular weight 9971.5674
Aromaticity 0.114942528736
Instability index 47.175862069
Isoelectric point 9.07257080078
Runs 13
Runs residual 0.0111658456486
Runs probability 0.0597611185847
Amino acid sequence MNVHSSTIHSSQKVKTTQISINKWINNMIYHTMEYYPIINITFLFHSLPIIPHSAMRFPN
CSGKGQCVSFWTLNIIYLACSCHIPGT
Secondary structure LLLLLEEEELLEEEEEEEEEHHHHHHHHHHHHLLLLLEEEEEEEELLLLLLLLLLLLLLL
LLLLLEEEEEHHHHHHLHHHHLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLL
LLLLLLHHHHHHHHHHHHHHHHHHLLL
PiMo ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiii
iiiiiiTTTTTTTTTTTTTTTTTTooo