NONHSAT089140

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT089140

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6204 nt

Genomic location

chr3+:39509064..39570988

Exon number

7

Exons

39509064..39509231,39521531..39521614,39543557..39543766,39544026..39544405,39554874..39555097,39565734..39565817,39565935..39570988

Genome context

Sequence
000001 GTTTTTAAGT GGATCTTCGC TGAGGACTCA TCAAAAACAC CTTGTGTAAT GAAAAACCCA GATCTATAAC CTCTCCCTAT 000080
000081 ATATTCTGCA TGCATTGAAG TAGGCTCAAA CCCTCAGGGA CCTGGTATAG ACGCAGAATC TGTTTCACAC AACAACTGCT 000160
000161 ATTTGAAGGA AAAAAAAAAA AAGAAGCAAA TGATACCAAG ACAAGCTCAT AACAGAGATC CAATCAGCAG ATGTGTACGG 000240
000241 ATGAAAATAC AGTGAGATGA GTCAGAAACC GGCCAAGGAG GGTCCCAGAC TCTCCAAAAA CCAGAAGTAC TCCGAACACT 000320
000321 TCAGCATACA CTGCTGCCCG CCGTTCACCT TCCTCAATTC CAAGAAGGAG ATAGTGGATC GGAAATACAG CATCTGTAAG 000400
000401 AGCGGCTGCT TCTACCAGAA GAAAGAGGAG GACTGGATCT GCTGCGCCTG CCAGAAGACC AGAACCAGCC GCCGTGCCAA 000480
000481 GTCCCCTCAG AGGCCCAAGC AACAGCCAGC TGCGCCCCCC GCGGTGGTCA GAGCGCCAGC CAAGCCACGG TCCCCTCCGA 000560
000561 GGTCTGAGCG TCAGCCACGG TCCCCTCCGA GGTCTGAGCG TCAGCCACGG TCCCCTCCGA GGTCTGAGCG TCAGCCACGG 000640
000641 TCCCCTCCGA GGTCTGAGCG TCAGCCACgt ccccgcccag aggtccgacc accgccagcc aagcagcgtc cccctcagaa 000720
000721 gtccaagcaa cagccgcgca gcagccccct cagagggcca ggcgccagcc gtggggggtc ccccgtcaaa gcttctaggt 000800
000801 tctggtaaca ccatctcttc ccttttgttc cccagcccta agATTGAAAA GGAAGATCAG GCCAACCCCA AAGAAGAAGT 000880
000881 GACCAAGGAG GAGTTTAAAC TGAATGAACA ACCTCGGCTC CTGGACTCAT TGCTTCACAA CCCATCTACC CCTGGATGAA 000960
000961 GTTATCTGGC TTCAAATATT ATGCAGGGGC AAACACCTGC TGATGTGGCA ACTGCTGATG CTCATGGTCC CCATGGCATG 001040
001041 GGGGCCTCAG GGCAGCCTGC CTGGAGtact ttgaagatgt catcccattg tcttctgacc tctataattg ccactgagag 001120
001121 atctgctgtc agtctgctta tccttccacg gactcaagtt tcttcaatct gaagatacat gtctttctcc agGGACATGT 001200
001201 GGAAAAAAAA AAGATGTTAT acaaccatca aagtggcaaa aataaaaaaa atcaagtatt ggcaaagatg tggggaaaat 001280
001281 tctcataagc tactgatgag aatttataaa ttattatgac acctttgggt tgcaatctgg ggatactggc aaagcagaaa 001360
001361 attgtacaac ctgtgatcaa gcaataataa ttttaggcac ccatcctaga gaaaacttga attcatagaa aaagtaggta 001440
001441 cacgtaaatc tgttcaagga atcattgttt ggcattgaaa ataggagaga gatcatgaga aattaccaaa atgtccacca 001520
001521 atagaatgag tgaatcacct gtggtatatt tataaataaa aatattaaat agaaggtaaa acaaatcaga catacacaca 001600
001601 ttagatagat aaatttagag gacaaaataa ggaacatgaa aagcaaatag tagatggcaa atgtaatata atatactatg 001680
001681 cataaatttt aacaacacac aatattatat tgCATATTGC CCAATAAGCA GAAGCCATAA GGTCTCACAC TTTTCTTATA 001760
001761 ATGCAATAGA ATAAAAATGA CAACAAAGTA AAAGGGTATC CCAAAAATAA AACTATCCTT TTGGAAAAAA AAAGATTTAA 001840
001841 AATAATTCCT GGTTTGAAGA AATAACAAAT TAAAAGCTAT ATATAAACGG TTAACAATAT TAGGTGGACA TATTTGTTTG 001920
001921 AAGAGATAGG TGAAAGATAG TTGAAAAGCC TGGGGGTATA TTCAAGGTTA TATGTCTTAG AAAACAAAAA TACTTGTTTG 002000
002001 GGTTCAGTTT TGGATCTGGG CTTGTTCTTG TGGCTTCTGA TGATTTCTGA CTTGGGGAAA AATGGGGAAG AGTTGAAATA 002080
002081 CGTCCTTCCA CCCAAACCTT TGTTTAGTAA TAGGTAGGAA AATGAAGAAG AAAATAGAAT GTTGCAGAAT GTGGAGGGAT 002160
002161 GTAAAATGGA CAGTACTAGG GTAGAGGGGA AGTCAGATTA GAGGAAAGAA AGAGCATCAG GAACAGTCTT GTGCTAGGAG 002240
002241 CTGGTGTGGC CAAGCACAGT CGGATGCCCA AAGATCCAAC AAGGCCATGG CTCTGTGTCC TTGAGTGGGC ACAACCATTC 002320
002321 CTAGCCAAGT TTAAGAGGCA AGTAAAAATA TAGGGGCAAT GTCAGATGAA GTCTTGTTCA GGGTATGGGG CTAGGATGAG 002400
002401 AGAGAATGCC ACAGAGTATG AAGGAAGAGT GATAGATCCA GATGAGATAC AGCTCAGAGT GCCACGCCCC CAGAAAGAGG 002480
002481 AATCAGGCAA GTACTGTCCC AAGGCAGCTG GAGGGTGAGG GCTGAGTGCC CTGGCTTCCT CACTTGGGGA GACCATGGGT 002560
002561 CTCTGTAGAA ATTCCAATAT AAAGGCAGGG AAATTTGACT GCATGGAGTC TTCAGGTAGA AATGTTTCTC TTGCCTAAAT 002640
002641 TCAGGTGCTA AATAAACAAC AAAATGGTAA CCTCTACTAT GAAGTGTTTC CAATGATGGG ATATCTGAGG CCATTACATT 002720
002721 CCTGGGAATA ACATGGTGAG GTGCAGGGTG GTGGTGGTGG TGAAACATAC GACAGACCAC TGTAAGTGAG AACAAATTAC 002800
002801 TGGCCCAGCC CAACCCACAC CAAATAAGAA ATTTAATATC CCTTTGGCCT GTTTTAGATT TTGGCAAAGC CAGGCCCATA 002880
002881 GTGCTTGCTG GGCTCTCTCT TCCACATCAT CCAGAAGACA CACATTTGCT ATGGAATGAT TGTGGAGGTG AGAGTATAGT 002960
002961 GCATATTAAT TCATGCAAAA AGTTAGATAT TAGCCCAGAA ATGTTAGTAA CAAGAAACTA CTGAATTCTC TGTTTGTCTG 003040
003041 TTGTGGAAAT AAAACCTTCT GGGGATGAAT CAAAACTATC TGACAATTAC TTGAAATGGG TGAATAGCTA AATGTAATGT 003120
003121 GCCTTGGATA TTATAACTAA AAGGTGCTAT AATCCAGTTA TATTTTTTAT CTTTTAAGGA TTGGTTCTGA GGAGCACTAC 003200
003201 CAGTAAATAT TGCAAAAATT ACATAAAGCT CCAAAAGCTA CTCTGTGTAA ACTTCTTGAG TGGGAATTCT CAACCATAAT 003280
003281 ATCTGGAATA TGACTGATAA TTCTGGATGT TAACTGATTT TATGTTCTGA TGTTTTGACT GGTTTTGGGA AAAATTTTGG 003360
003361 GAAAAAAGAG TTTTCctcgt aaatacccaa caactgggtc tctgggtaaa aaggcctaat ttatagagat tgctaatttc 003440
003441 catggtgtaa atatttccac aatgcagatt ccTTCCTTCC tttttttttt tttttttttt gagatggagt ttcactcttg 003520
003521 ttacccagac tggagtgcaa aggtgcgacc ttggctcact gcaatcttca cctcccgggt tcaagccatt ctcctgcctc 003600
003601 agcctcccaa gtagctggga ttacaggtgc ccacgaccat gcctggctaa ttttgtattt ttagtagaga tagggattca 003680
003681 ccatgttggc caggctggtc tcaacctctg gacctcaggt gatccacccg cctcggcctc ctaaagtgct ggagattaca 003760
003761 ggcatgagcc accacgcccg gACCATGATG CAGATTTCAA GCTATGAACA TGATTCTCTG GAGTTTACCA TTTGTCTTTT 003840
003841 AATTGGCAAA TTTGatgcag aattgggaag agaagcacac aattgactct cgtcagctgg cacaagctgg tgccagtgca 003920
003921 ccactgTATA TATCCATGGC CCTCTGTGAA GCTAGAGTTT ACTACTAAAA TTTGTGCTCC ATAAATATAC AAAGGCACTA 004000
004001 GTAAGAGAAA AAATATAAAG AGAATATAAA CTAAATTCAA ATTAGGGAGC TCAAATGGAG AAAATTGACA GATAATATTT 004080
004081 TTGAAACTTT GAAAAGTAGT ATTTGTCTAG ATTCACCTTT TATTACCTTT TCCttttttt cttttccttt tttttttttt 004160
004161 tttgagacgg agtttctctc ttgttaccca ggctggagtg caatggcacg caatctcagc tcattgcaac ctcggctcac 004240
004241 tgtaaccttc accttccgtg ttcaaatgat tctcctgcct cagccttccg agtagctggg attacaggca cccaccacca 004320
004321 tgcccagcta attctttgta tttttagtgg agatggggtt tcaccatgtt ggccaggctg gtcttgaacc cctgacctca 004400
004401 ggtgatccac ccacctgggc ctcccaaagt gctgggatta caggcatgag ccaccgcgcc cggccTGTTA TTATCTTTTA 004480
004481 TTAAGCAAAC AGCGTATCTA TGTATCATAC TGAGTGTTCT GAGCTGTTAG TTTCTTTGGT GTTCATCTAG ATGGAAGCTG 004560
004561 GGGCTTCCTT CCTTTCAGAT ATTGGTGCTA ACATGAAGCT GACCAAAGAA TTGATGGGAT CTGCACACTG TAAAGCCGGT 004640
004641 TTCAGGATGG CTGAGCTGAC GGTCAAGAAA GAAGAGAAGA TATGAGCCGC CTGCATTTTG GGGTGGTGGC AGTGAAATTT 004720
004721 AGACTTGTGA TTTGGTATGA CAATATATGG CTTTTTGTGA TTGTTAACAT TAATGAAAAC AAGAAAAATT AGTTGCTCAA 004800
004801 AAGTTGAAAA ATGGATTCAT AAACTTTTTA TTAGAGTAAG GCAAAAGAAC ATATTAAAAT AGAGGTAAAT TAGAAATGTC 004880
004881 AATAAGAACC CATGGACATT TTTTATAAGG AGACTTTATC TGTTCTGTCC CTACAGTGAT TTATGCTCTT GGATATTTTT 004960
004961 GCTGTCATCC TGACAAATTC TAGTTGGAAT ATGGAACAAG CTTATTTGTA Gacctagtgc ctgtggcttc taaagcaatt 005040
005041 ttctgaaaag agaaaccact gcctgttgga agaatagttg attccatacc tcaagctagg gaaaaaaaat cagaattagt 005120
005121 ctgtgaattc tagatgttga gagaaagcag ggTTTCATTA GGGCATCGGA GAGTCACAAG TCCATAGGAT GCAAAAAGGA 005200
005201 AGATGAAATA AAATTGCCTG AAAAACGCAC CTGAATTTCT GGCATTGTTT ACTGAAAAGG CTGTGTATTG ATGAACCCCA 005280
005281 ATTATGTGAG GTCTACATTT AAGAGTTTAT AATCAACAGT TTGAAAATGC AGGGTGTTGT TTCTTTCTAT AAGGAGACAA 005360
005361 AACAGTCAGA AGGGAGTGTC ACAGGACATT ATCACAAAAT CAAAGTTCTC CATGAAATGT GGTTCATTTG CTAGAAAATA 005440
005441 ATGCAAGCCT ATTGGAGAGA ATCAGGGCTT CTAGTGATGC TAGGGATGAC CTTAAGCATT GTTTGTAAAT CACACTTTTT 005520
005521 CCTAGTCTTT CAGCAGCAGC TGCACAGAGT AGGCCTGCTT CTTCCCATGA AAGCCACACT GAGTTTTATC AACTAGTAGT 005600
005601 GTGTGGGCAC TATTGCAAGT TATGTTGTGT TGTTTATGGC CATTTATCCA ACAGTGCTTT CCTCTGTGCG GGGCTCTGCA 005680
005681 GCCTCGTTCT ATGTTATTTT TATTACCACG TGTCTGTGCG CCTCAGGTGG CAAAGCAGAA TCAGCTTCTC TACCCTCAGC 005760
005761 AGGGCTCACT ATGACTCACT ATAAGGGAAG AAAATCTTAC AGATGTCAGA AAATGTTAGG TAAGTGGACA GTGATAAACA 005840
005841 CAAAACAGCA AGTGGTCAGT ATCAAAGAGA AAAACAGTAT GTTGGTGAAG GAGAAGTATC AAAGCTAGTT AAAAAAGTAA 005920
005921 CAGGAGAAAT GTAAAGGGAC AATACTCCAC AAAAATTTAG ATTGTAACTG AGCTTCTTCT CCTAAAGAGA TTTAAAAATA 006000
006001 AAGTATAGGA AATACATGAA GAAACAAAGT AAAATGCCAA GGTGTAAGTT TGACCATGAA TATCTAGGGA AAAACATACT 006080
006081 TGCACTAAAA CAACCAAATA TGCAAAAATC AAGTGGAAAA ACAGGTCAAA ATAATGCCAG TTGATGTCTG TAAGAACTAA 006160
006161 ATGTATAATA AAATGAGCAA AAAAAATGGC CAGTTTAACA CCAA
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Predicted Small Protein

Name NONHSAT089140_smProtein_980:1171
Length 64
Molecular weight 6486.3519
Aromaticity 0.015873015873
Instability index 41.6619047619
Isoelectric point 6.80670166016
Runs 12
Runs residual 0.0455134434726
Runs probability 0.048232055585
Amino acid sequence MQGQTPADVATADAHGPHGMGASGQPAWSTLKMSSHCLLTSIIATERSAVSLLILPRTQV
SSI
Secondary structure LLLLLHHHEELLLLLLLLLLLLLLLHHHHHHLLLLHHHHHHHHHLLLLLLEEEEELLLLE
ELL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL
LLL
PiMo oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiii
iii