NONHSAT089483

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT089483

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4544 nt

Genomic location

chr3+:47234969..47239512

Exon number

1

Exons

47234969..47239512

Genome context

Sequence
000001 agacagggtt tcactgtgtt agccaggatg gtttcgatct cctggcctcg tgatccgccc gcctcagcct cccaaagtgc 000080
000081 tgggattaca ggtgtgagcc accgcgcccg gccTGAAATG TGCATTTTTG TTGCATGGGC CTAATTTAAA ACTGGCCCAA 000160
000161 GGGGACATTT TGTACAATCG CCGAGAAATT TGCAATCTCA GATTGAGACT TAAAATTATT AAATTCAGCT TTGACTGAAT 000240
000241 TTTTGATGCA AAAAAAAATC ACGAAACCTT AAATACTGAA CCACCAAAGA AGGGTGATAG ACAATTAACT CTGGCTGTTA 000320
000321 GCCTGTGTTA CTGTCATTAC AACACTTAAA AACTGTGCTA GGGTAAATTA AACCTTTTGG GTTTCAGTAA TTAAGATACC 000400
000401 CTGAGAGGAA CACAACCTCA TAGATCTTGG TTTCTTGTGT TGTGTAGTTA AGTGGCCTTA CAGGCTGGCT TGTGATGATG 000480
000481 TCAGAGAATG GGATGTGGAG CTTAACTGTT CTTAGCATTT TGCTAGGCCC TATGAGGTAG AGGAGGCATT TTTCCCAATA 000560
000561 TAGAGTCATG TAGCTTATAT GTGGtgtgga aataaatgaa gaccaaccaa ataagaacag gcaaaagcga tttcatcaga 000640
000641 gcttgctata gcaaaggagt cagacatcat cacatgtttt ggcagagact caaagtcagg caaaggagtg ggaaagcttt 000720
000721 atggtggaaa aaagggaaga cttcaggtgt gactcaatta gaacccatga gtggtctaat cagaagtggg acatcctata 000800
000801 tggatatttg gctttctttc attggtccta aattggaagc aaggacaaaa attacgtaag ctatctgtta ttattcaagt 000880
000881 cctggctgtt tggggctgat tgttacaggg ttgttgtttg gcttcctgga ctggttgcta aagatagggg tctgatttcc 000960
000961 ttcaagtctg acttatagat agtaggctag ttactgtaga taatgggttg gtttcttggg ctggtggctg cagattatgt 001040
001041 atcagagtcc tatttttata tacggtcttg ctattgtcca tttgcatatt cagtctctcT GTGTTAAAAC TGCTTGAATC 001120
001121 TGGGGCTTTT TTAAAAATAA tagaggtggg gtcttgctat gttggccaga gtggtcgcaa actcctggcc tcaacagtcc 001200
001201 tcttgactca gcctcccaaa atgctagtgt gagccaccat gcctggccTG AATCCAGGGC TTTTTTATTC CACAGCTATG 001280
001281 TTCTTTCCAC TATTGAATGC TATCAGATAA TATCAAGGAA TTAAATAAAA TATAATCAGC TTCTCCCTTT TCTCCTTCAA 001360
001361 ACACATCAGC CAACAGCTTT TTTCTTTTCt tttcctttct tttttttttt ttttttttga gatggagtct tgctctgttg 001440
001441 cccaggctgg agtgcagtgg cacgatctct gctcactgca acctccgcct cccggattca agcaattctt ctgcctcagc 001520
001521 ctccctagta gctgggatta caggtgttca ccactatgcc cacctaattt ttgtatttta agtagagaca gggtttcacc 001600
001601 atgttggccc agctggtctc aaactcttga cctcaagtca tccacctgct ttggcctccc aaattggttg gattacaggc 001680
001681 atgagccacc aagcccagcc AAGAAATCat ttctaattta ggcacaatag gaggttgaat cacatctgat gtaaggcttg 001760
001761 tggactacag gcatttaact gctgagtgag cttagttaca cgtgcagtat cctccttttc gtacatttct gatgttctct 001840
001841 TTTTGCCATA aagtatacaa tttagtagta ttaagtacat tcacattgct atgcagccat aaccactatc catttccaga 001920
001921 acattttcct catcccaaac aagaactttg tattcattac atgataactc ctcattccct cctttctcta cccttggcaa 002000
002001 acaccattct acttctgtct gactactcat acagtatttg ttctttttgt ctggcttatt tcacttagca taatgttttc 002080
002081 aagtttcgtc catttagtag catgtatcag aatttcgtta ctttttaagg ctgaacaagt actccattgt atgtatatat 002160
002161 tacattttgt ttacctattt atctgttgtt gcatatttga gttCTTAAAG TTAATTACAC TAAGTATTAT AGTTAAGAAG 002240
002241 CACCAGTTTT TCTTCTAATA CTATATTTGG AAAAATGGGG AGACAAAAAT AGTACAAGAT AGAGATGCTC AATCTGTAGC 002320
002321 TTGTGGCGAA AAGATTCACA AATATACAGT AAGTAATCAG AGATGGAGGT AACCTATCAA CCAGAATGTG ACAATGTAAG 002400
002401 GAACTTTGGA ATAGGCAGAA AAGAGGACTT GGTGTctcta ataaaaagct atgcattttt agtgcacact cttacaggta 002480
002481 atctaaatat aactctatca ctctatcatt gcctttgagc tactttacaa ctctgtaagt tgtagataac tgatattaat 002560
002561 gcaaaataat tcttgtataa acatgaaaat aaattatatt ctgtgaaAAA AAAGtttggc tattgtgaat aatgctgcta 002640
002641 tgaacatggg tgtacaaata tctgttagaa tccgtacttt tgattatttg tatatatacc tgggagagga attactggac 002720
002721 catatgttaa tttttttttt CTTACCATGA GTTTGACttt ttttttttga aaccgagtct ggctctcttg cccaggctgg 002800
002801 agtgcaatgg tgcgatctcg gctcactgca acctctgcct cccgggttca agcgattctc ctgcctcagc ctcccgagta 002880
002881 gttgggacta caggcgcgca ctaccacgcc cagctaattt tttgtttttt tagtagagac agggtttcac cattttggcc 002960
002961 aggatggttt cgatctcttg accttgtgat ccgcccgcct tggcgtccca aagtgctggg attacaggcg tgagacatcg 003040
003041 cgcccggccA CCTAGCTAAT TTTAAAATCA TTTTTTggcc aggcgcgttg gcccccctcg ccaatcccag cactttggga 003120
003121 ggctgaggca ggtggatcat gaggtaagga gtttgagacc aacttggcca acatggtgaa acccagtctc tactaaaaat 003200
003201 gcaaaaatct cactatgttg cccaagctgg tctcgaactc ctgagctcag gcaatctgct gcttcagcct cctgaagtgc 003280
003281 taggattaca ggcatgagcc accgcgccca gcggatgatg tttttgatgt cgtatctaag aactctttgc ccaactcaaa 003360
003361 gtcacaagat attttctccc atgttttctt atagaagtGG ttttgttttg ttttgtttgt ttgttcattt gagacagagt 003440
003441 gtcaccttgt cgcccaggct agagtgtagt ggtgcgatct cggctcactg caacctccgc ctcctgggtt caagcaattc 003520
003521 ttcgcctcag cctcccgagt agctgggatt acaggcaccc gccaccatgc ccggctaatt attgtatttt tagtagagat 003600
003601 ggggtttcac catgttggcc aggctggtct tgaacccctg acctcaagtg atccgcccac ctcagcctcc caaagtgctg 003680
003681 ggattacagg catgagccac tgcacccagc cGATTTAGCA CCTTAATCAA AAATCAACTG ACCAGCACTC ACATTCCTGA 003760
003761 TTTCAAAATT TATTACTcca gtctgggtaa cctagtgaga cctcacctct acaaaaataa aaagataaat tagccaagtg 003840
003841 tgatggcaag tggctgtaat cctagctatt caggaggctg tgacagtagg atcgctgagc ccaggagatc aagactgcag 003920
003921 ggagctatga tcagtcgtgc cactgtattc cagcctgggt gatagagcaa ggccctgtct ctaaaaaaac aaaaacaaac 004000
004001 aaacaaaaCT ACtgataatc tacaggtcac atttggcagg cttccaaatt aacctgccta gaaaaggtct taggattctt 004080
004081 ggcttacatt ctgtccctta ataaaaaatc ttgGcatgcc tgtaatccca gcactctgag aggctgaggc aggcagatca 004160
004161 cttaagccca ggagtttaag accagcctgg gcaacacggt gaaaccccat ctctacacaa aattcaaaaa ttttgtggtt 004240
004241 gtggtggtgc catctgtagt cccagctact tggtaggctg aagtgggagg attgcttgag ccgggggagt tcaaggctgc 004320
004321 agtgagccac tgcactcctc cagcctgggg cataacagag cgagaccccg tctcaaaaag acaaaacaaa aCAGGCAGGG 004400
004401 CACGGTGGCT CACGCCTgat cttgcggtga gctgagatcg cgccactgca ctccagcctg ggcgacagac tgagactcca 004480
004481 tttcaaaaaa aaaaaaaaag aaaaaaTTAC Cttttttttt ttttttgagg cagagttttg ctct
[back to top]

Predicted Small Protein

Name NONHSAT089483_smProtein_1421:1720
Length 100
Molecular weight 11249.8295
Aromaticity 0.131313131313
Instability index 70.3757575758
Isoelectric point 7.53302001953
Runs 12
Runs residual 0.0124777183601
Runs probability 0.0278808219985
Amino acid sequence MESCSVAQAGVQWHDLCSLQPPPPGFKQFFCLSLPSSWDYRCSPLCPPNFCILSRDRVSP
CWPSWSQTLDLKSSTCFGLPNWLDYRHEPPSPAKKSFLI
Secondary structure LLLHHHHHHLLEEEHHHLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLEEEELLLLLLL
LLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -