NONHSAT089786
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089786 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2758 nt |
Genomic location |
chr3-:50153455..50193518 |
Exon number |
4 |
Exons |
50153455..50155681,50159958..50160021,50173890..50174001,50193167..50193518 |
Genome context |
|
Sequence |
000001 AATGCCTCAG GACTGGAGGT CCTCCCACTC TGCTGATGTG GGAGACCCCC CACGTGGGGA CTGCCAGTAT ACCGCTTCCC 000080
000081 TTCGGGCTGG CCAGTCCTCA AGTAGAGACA CTGAGGTAGG GCAAGCGCAT CTACGAGGAA GAGCGCTGCC TCGGGCGTTA 000160 000161 ATGGGAGAGA GAGCTGAGGC AGAAGGGGGA TCGGAACTCC CGCTCCAGAA GCGTGAAGGT GGGGGTGTAT GAGAGCACCC 000240 000241 ACCCAGAACC TTGCAGGAAA AAGTTGCTTT GCACATGGGT GACCCCGCAG GCCACATCAT CCACACATCC ATACGCCGCC 000320 000321 CCGTAGGTAA GGGGTCCGGG CCTCCAGGAC AGGAGACTCA GCTCTGGGAG GACGGCCACC ATCTCTGGCT CAGTCACATT 000400 000401 TGGTCCCCAG ATTCTGGCAA CCCTGGGTAA AAGCTCAGTC ACCTGACCTA GTGACGACCA CAAGGGCACT GGGAGGCATC 000480 000481 CCAAGACCCA GCTCACTCCA GGGCTGGACC TCAACCTTGT ACCTGCAGGA CCACCCACCA GGAGACAGAA GAGAGAAAAC 000560 000561 TGTATATGAA GACAAGGATT TCTCCAGAAG AGACCAGGAG CAAGTATAAG GACTGGAGGA ATAAAATGGG CTACGGAACA 000640 000641 CAGGCAGATG AAGCAAATCA CCCACCCCTC AATGCCTGCT CAGCAAGCAT CCACGCCTAG GAAAGGGCCC CAAAGTATTC 000720 000721 CTCTGAAGGT CTGGGAAAGG TCTGGTAATT ACAGGCACAC ATTATACAGG ATAGCTCAAT GTCAGCAGAA CTCACATAAA 000800 000801 CAGGATGAAC ATGGTCTACA AGAGTCTGAC CTAAGCTGTG CTCCCAGGAC AGAGCAGGGG CAATTACGGG TGGAGCTCCT 000880 000881 GCCTAGAAGG CCAGTGGGTA GGGGCCTCCG ATCCTGGGAT ATGATGCCTC AATGTGGGCT CTGATCAATT TAAAGATTTC 000960 000961 TTATCATGGG TGAAAACCCT ACTAAATTTT TTTTTTTTTT TTGAGACAGA GTCGCTGTTG CCCAGGCTGG AGTGCAGTGG 001040 001041 CGTGATCTCG GCTCACTGCA ACCTCCTCCT GCCAGGTTCT AGCAATTCTC CTGCCTCAGC TTCCTGACTA GCTGGGATTA 001120 001121 CAGGCACACG CTGCCACGTC CAGTTAATAT TTTGTATTTT AGTAGAGACG GGGTTTCACC GTGTTGCCCA GGCTGGTCTC 001200 001201 AAACTTCTGG GCTCAGGCAA TCTACCCTCC TCGGCCTCCC AAAGTGCTGG GATTACAGGT GTGAGCTCAT GCCTGTAATC 001280 001281 TGCCCCTTCA TGCTAAGGTA AAGCTGCTCC TGGCTCCCAG GCTCTATGAG TGCTCTGATC TCATCTCTGG AACCGGCCTG 001360 001361 TAAGCCTGGC AAACATCAAG ACCTGACCCC ACTGCTTACC TCAATGGGAG CCGTAATGCC TTGACACTTT CGTCCCAAGC 001440 001441 CAGAGCCTTC CCGCCAGCCC ATGGCCTGCA GCATCTTGTT GCCAATGTTA CTGTGGTCAA TGCCATCTTT GGTGGGTTGC 001520 001521 TCGTAATTCC TGCCAGTGGC AAACACACAG TTACTTAAAA CAGCCAGGGC CCCAGCTTAC GAACTGGAAA ATGTGCACAT 001600 001601 CACATACACA GTGCCGGCAT CAAACTGCTT CTTGCGCTTG GGCTCTGGAG GTTCTGGAAT GCCGTACTTC TCCCGTCTTT 001680 001681 CTGCAGCTCG GTCTCGGTAT TTCATCTACA TGGGAGAAAA AACACTGCTG GAAATGTTCA CAGACTTCAA CCTGTAACCG 001760 001761 TCTAATGCAC CTATTCAAAA CTATCCCCTC AAGTATTTTT AAATCTGAAG AATGCTTTTT TTAGACTGCT CTGAAATACC 001840 001841 AAATTCCCTT GTTCCCATCA TCATACCTAG TCATATCTGA AATGTTAAAT TTGTAAATAT GAATTGTGTG GAACCAGGGG 001920 001921 CAGAACTATG TCTCCAACAA GCAGTTTTAT TTAATTAGCC ACCCTCTGTC AAGCTACTCA ACCAGCCCAC TGGGCAGTGG 002000 002001 GTACAGCTTG CGAAGAGGAA GGCAGAGTTG CCCGTTCTCC TCAGCATTTG GACAGGCATA CCTCCAACAT TTGGGAAAGG 002080 002081 CATACCTCCA ACATCAAGGA GGCTTCCAGA GACCTGTTCA GCAGTCGCTG GGGAGGTGGA ACCATAGATA GTAGGGCAGG 002160 002161 AAGGGTGTGG GGAGAAGAAA AGCAAAAGCC TTAACTACAA ACACTTCAGA AATATCTCAG GTGGGAGATT TCAAACCCAC 002240 002241 TTGCTCATTT CTAAACCACA GGCCTCTATT TGCATTTAAA TCCCTGCCCA CCTGGCCGCC AACCTGCCCC AACCACCAGC 002320 002321 ACTAACTGCT TGCCCATTAT TGTGTCACAG GCTTCTCTCT TGCCTTTGTT CCCAGATCTG CTTGCCATGC CCTGCCCACC 002400 002401 CTTCCTTTCA TATCACCTGC AATAACCTCA CGTCCTGCTG TCCCTTGGGA TTAATTTGAA GCGCACTTCT TTGCCCATGA 002480 002481 AGGCTTCCCT GGCCAGGCCA AACTAGACCA CTCTCTCCAT AACAAAATCC AGCGTATTTA AGCAGCAAGC TCTGGCATTG 002560 002561 CTGTGAGAGA GTCTCGGCAG TGTGCTTCTG CCTTGTGCAC CCTTATGATG AAGGGACAAT GTGAGGCTCA CAAGGCACAC 002640 002641 AGAGGCTGGG TCTAGGCTAC ATGAACTACA ATGGTCAGAT GACAAGGGTA TGACAAATCC TCCTACCCTG CCCCTGGGAT 002720 002721 CTGGAACTAA ATGCTACAAA TAAAAGCTAA AGGCAATT |
Predicted Small Protein
Name | NONHSAT089786_smProtein_647:943 |
Length | 99 |
Molecular weight | 11244.7111 |
Aromaticity | 0.0408163265306 |
Instability index | 70.6867346939 |
Isoelectric point | 9.80682373047 |
Runs | 9 |
Runs residual | 0.0472057982071 |
Runs probability | 0.038872205539 |
Amino acid sequence | MKQITHPSMPAQQASTPRKGPQSIPLKVWERSGNYRHTLYRIAQCQQNSHKQDEHGLQES DLSCAPRTEQGQLRVELLPRRPVGRGLRSWDMMPQCGL |
Secondary structure | LLEELLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |